Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1538 ATGGAAAACAAAGCAACGATTCTGATGCAAGGATATGAAGTTGGACGTTTACTTGGCCAAGGCAATTTCGGCAAAGTTTATCATGCAAGGAACTTGAAAACAGGCCAAAGTGTTGCAATCAAAGTGATAAACAAAGAGAAGGTGATGAGGGGGGGTATGAAGGATCAAATCAAGCGTGAGATCTCTGTGATGCGTCTTGTGAAGCACCCCAACATTGTGCAAGTCTATGAGGTAATGGCAAGTAAGACAAAGATATATTTTGCAATGGAGTGGGTGAAAGGTGGTGAGCTTTTTCATAAAGTGTCCCAAGGAAGGCTTAGGGAAGAAATGGCAAGGAAATATTTTCAGCAGCTGATTGATACTGTTGATCACTGCCACAGTAGAGGGGTGTATCACCGTGATCTTAAACCAGAGAACCTTCTCCTTGATGAAAATGGGGACCTCAAAGTTTCAGACTTCGGTTTGAGTGCATTGTTGGAATCAAAGAAAAAAGATGGCCTTCTTCACACAACATGTGGGACTCCTGCTTATGTAGCTCCTGAGGTGATCAAGAAGAAAGGATATGATGGTGCCAAAGCAGATATTTGGTCTTGTGGAGTGATTCTTTATGTTCTCTTGGCTGGTTTTCTTCCTTTCAATGATAAAAATCTAGTGGAGATGTACAAGAAGATTAGCAAAGCAGATTTCAAGTTCCCACGATGGTTCTCCTCAGATGTGAAAAGGCTTCTATATAGGATCCTTGATCCCAATCCAAGGACAAGAATTAGTATTTCCAAGATTGTGCAAAGCAATTGGTTTAGAAAGGGGTATATGCAGATTGAAGCACCAAGGTTGCCACCCTTGTCCCCTACAAATGGTGAGGATATCTCAGATGTTCAGGCTGCATTTTCTTCATCGGGTTTAGATTCAGATGACAGCTCGAAATCAGATAATGATCAAAGCCTCATGAAGCCTTATCATTTTAATGCATTTGATATCATATCACTCTCTTCAGGACTTGATCTTTCTGGCCTGTTTGAGAAAGATAATAATGAAAGACAAGCAGCAAGATTTACTACTAGAAAGCCACTTTCAATCATTTTGTCAAAACTTGAAGACGTAGCACAGGTAGATGGTAGATTCAATGTCATTAAGAAAAATGGAATTGTTATATTGAAGGAAAACAAAACACCGATGAGAAACCAACTCATTATTGAAGCAGAAATTTTTGAAGTGACGTCTTCCTTTCATATTGTTGAGGTGAAGAAAATTGATGGAGACACATTGGCGTATTGGAGATTCTGGAACCGGTACTTGAAGCCTTCACTAAATGAAATAGTTTGGACTTGGCAAGGATATGAGCAACAACAATTGTAG 1356 0.3975 MENKATILMQGYEVGRLLGQGNFGKVYHARNLKTGQSVAIKVINKEKVMRGGMKDQIKREISVMRLVKHPNIVQVYEVMASKTKIYFAMEWVKGGELFHKVSQGRLREEMARKYFQQLIDTVDHCHSRGVYHRDLKPENLLLDENGDLKVSDFGLSALLESKKKDGLLHTTCGTPAYVAPEVIKKKGYDGAKADIWSCGVILYVLLAGFLPFNDKNLVEMYKKISKADFKFPRWFSSDVKRLLYRILDPNPRTRISISKIVQSNWFRKGYMQIEAPRLPPLSPTNGEDISDVQAAFSSSGLDSDDSSKSDNDQSLMKPYHFNAFDIISLSSGLDLSGLFEKDNNERQAARFTTRKPLSIILSKLEDVAQVDGRFNVIKKNGIVILKENKTPMRNQLIIEAEIFEVTSSFHIVEVKKIDGDTLAYWRFWNRYLKPSLNEIVWTWQGYEQQQL* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1538 451 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 2 450 - -
Apr1g1538 451 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1538 451 Pfam NAF domain 319 377 IPR004041 GO:0007165
Apr1g1538 451 ProSiteProfiles NAF domain profile. 316 340 IPR018451 GO:0007165
Apr1g1538 451 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1538 451 Gene3D Transferase(Phosphotransferase) domain 1 3 322 - -
Apr1g1538 451 CDD CIPK_C 322 437 - -
Apr1g1538 451 SUPERFAMILY Protein kinase-like (PK-like) 8 310 IPR011009 -
Apr1g1538 451 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Apr1g1538 451 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1538 451 Gene3D Kinase associated domain 1, KA1 323 442 - -
Apr1g1538 451 PANTHER - 2 450 - -
Apr1g1538 451 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1538 Apr-Chr1 24877667 24879022 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1538 1 445 CBL-interacting serine-threonine protein kinases AT5G45820 62.780 0.0 573
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Apr1g1538 Pkinase 3.6e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1538 K07198 - gmx:100807927 700.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1538 1 24877667 24879022 Apr1g1538 1 24877667 24879022 ECH