Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1533 ATGTCAGAAGGATACGAGATTCATAACAATGAGGAAACATCATCGGGATGTTCCCAGAAATGTTCTTCCTTTGACTTGAATGAAGAAGCTAGCAGTGAAGAAAACAATGATACAGAAGAAGAGACCTGTGAGCTCACAACTGAGGAGAATGAGAAAGCAAAGGATGAGGGCATTTCAGTAAATAGTAGTACATCAAGAGAAGGAAATGAGAGAAGAGGCACAGTAAGACAATATGTTAGGTCAAAGATGCCTCGGCTTAGGTGGACTCCTGAGCTCCATCTTTCATTTGTTCATGCTGTTGAAAGACTTGGTGGTCAAGAGAGAGCAACACCCAAGTTGGTGCTTCAACTAATGAATGTGAGAGGACTCAGCATTGCTCATGTCAAGAGTCACTTGCAGATGTATCGAAGCAAGAAACTTGACGAGGCTGGACAAGTTCTAAGCCAAACGTACAGGTCGACCCAAGAAGTAGGTCGTAGATCTCAGATACTCCATCAGTCTATGAGTCCTCAACAGCATTTGAAGATGGGGAATGGTGGGATTATTCTTGCAAGTAATTTCAACGAGCATAGTCATTTCCAAAGTCTCTTGCAGCCCTCCTTCTCCCAATCACGTTCCCATGCAAACACCACTCATTCGAGGCACCAGCATTGGTACTTCAATCACCAACCTTTTGGAGTTCCAATAGGTTCAAACCAAATTCAACTAAAGGATACAACCGTAAGAGTTGCACCCATGAGAGCAAGTCAATTTCTTGAAGAGAAAAGATGGCCTCCTTTGGAAATTATGAGTAATCAACAATCGAAGTTCAAAAGGTTACCTGCCAATATTTCTGCTAAAATTGGGTCAGAAGCTTTTCAGCCAGTTGGGAACAAAACAAGTATCGGATTCGGAGAATATCTATCCAAGAACTCTAATGAACCTCGCAACTATTCCAACAGTTTAAAGCTACAATTTGATCCGCCGTTTCGGATTAAGTTGAATCAAGAGAAACTGCAGAAAGACGAGCAACAATTGCCTAATTTGCAATTGAGTTTGAGCCACACAGTTGGAACCGATGGCAAGATTGTTCATTACAGAGAAACCCAAGAAATTAGCACAAAGCTTTCACTTTCTTAG 1119 0.4173 MSEGYEIHNNEETSSGCSQKCSSFDLNEEASSEENNDTEEETCELTTEENEKAKDEGISVNSSTSREGNERRGTVRQYVRSKMPRLRWTPELHLSFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDEAGQVLSQTYRSTQEVGRRSQILHQSMSPQQHLKMGNGGIILASNFNEHSHFQSLLQPSFSQSRSHANTTHSRHQHWYFNHQPFGVPIGSNQIQLKDTTVRVAPMRASQFLEEKRWPPLEIMSNQQSKFKRLPANISAKIGSEAFQPVGNKTSIGFGEYLSKNSNEPRNYSNSLKLQFDPPFRIKLNQEKLQKDEQQLPNLQLSLSHTVGTDGKIVHYRETQEISTKLSLS* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1533 372 Gene3D - 83 140 - -
Apr1g1533 372 SUPERFAMILY Homeodomain-like 82 138 IPR009057 -
Apr1g1533 372 MobiDBLite consensus disorder prediction 30 46 - -
Apr1g1533 372 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 80 140 IPR017930 -
Apr1g1533 372 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 1 372 IPR044848 GO:0003700
Apr1g1533 372 MobiDBLite consensus disorder prediction 1 74 - -
Apr1g1533 372 Pfam Myb-like DNA-binding domain 86 136 IPR001005 -
Apr1g1533 372 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 372 - -
Apr1g1533 372 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 84 139 IPR006447 GO:0003677
Apr1g1533 372 Coils Coil 36 56 - -
Apr1g1533 372 MobiDBLite consensus disorder prediction 7 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1533 Apr-Chr1 24807717 24812489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1533 20 145 G2-like Transcription Factor Family AT2G42660 52.756 1.99e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Apr1g1533 Myb_DNA-binding 2.5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1533 - - gmx:102669757 517.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1533 1 24807717 24812489 Apr1g1533 1 24807717 24812489 ECH
Apr3g2207 3 37867269 37873302 Apr1g1533 1 24807717 24812489 PCT