Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1525 ATGCCGGACTTCCACGATTCCCTTGCGCCGCCGTCGCGCCCCGTCCCCGTCCGCGAGGATTGCTGGTCCGAGGAAGCTTCCTCCACCCTCGTAGACGCATGGGGACGCCGTTATCTCGAACTCAATCGTGGCAACCTCCGTCAGAAGGACTGGCAGGACGTCGCCGACGCCGTTAACGCTCTTCATGGCCACACCAAGAAGACTCACCGCACCGACGTGCAGTGCAAGAACCGCATCGATACCATTAAGAAGAAGTATAAGATCGAGAAGGCTAGGGTTTCCTCTTCCAACGGTGCTCTTTCTTCTTCCTGGCCTTTCTTCGAACGATTAGATGCTCTCATTGGCCCTAATTTCAATGCCAAAAAACCCACATCTTCTCCCTCGCCTTCGCCGCCCGTTGCTCTTCCTTTGTTGCCGCATCGTAAAAACCCTTCTTCCCATGCGATTGCGGTGCCGCCGACGGCTATCGCGCTGCCCCAGAAGCGCTCGGCGGCGGTGGCAATGGATGAAGGTTACTTCAGGAGGAATTATTCCGCCATGGCTGCGGCTGCAGCGGCTGCGGAGGCTGATGAAGAGGAAGAAGAGGAAGAGGAGGAGGAGGAGGAGGAGTTGGAGGAGGAGGAAGAAGATGAAGACGAAGGGAGGGGAAGCGAGGTGGAGGAAGGGGAGAAGGAGAGGGAAGGCATGAGGAGGTTGGCGAAGGCGATAGAGAAGTTTGGGGAAGTGTATGAGAGAGTGGAGGGGCAGAAGCTAAGGCAGATGGTGGATTTGGAGAAACAGAGGATGCAGTTTGCTAAGGATCTTGAAGTGCAGAGGATGCAGATGTTTATGGACACGCAGATTCAGCTGGGAAGAATTAAGCGCGCCAAAAGATCTGGGTCTAATGATATGTATAGCTAG 900 0.5522 MPDFHDSLAPPSRPVPVREDCWSEEASSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHGHTKKTHRTDVQCKNRIDTIKKKYKIEKARVSSSNGALSSSWPFFERLDALIGPNFNAKKPTSSPSPSPPVALPLLPHRKNPSSHAIAVPPTAIALPQKRSAAVAMDEGYFRRNYSAMAAAAAAAEADEEEEEEEEEEEEELEEEEEDEDEGRGSEVEEGEKEREGMRRLAKAIEKFGEVYERVEGQKLRQMVDLEKQRMQFAKDLEVQRMQMFMDTQIQLGRIKRAKRSGSNDMYS* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1525 299 MobiDBLite consensus disorder prediction 187 218 - -
Apr1g1525 299 Gene3D - 22 88 - -
Apr1g1525 299 MobiDBLite consensus disorder prediction 118 151 - -
Apr1g1525 299 Pfam Myb/SANT-like DNA-binding domain 19 113 IPR044822 -
Apr1g1525 299 Coils Coil 177 217 - -
Apr1g1525 299 MobiDBLite consensus disorder prediction 183 229 - -
Apr1g1525 299 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 9 295 IPR044823 -
Apr1g1525 299 PANTHER OS05G0560600 PROTEIN 9 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1525 Apr-Chr1 24740696 24746087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1525 18 298 Trihelix Transcription Factor Family AT3G14180 31.445 5.94e-44 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Apr1g1525 Myb_DNA-bind_4 4.6e-25 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1525 - - gmx:100815241 456.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1525 1 24740696 24746087 Apr1g1525 1 24740696 24746087 ECH
Apr1g1525 1 24740696 24746087 Apr3g0976 3 24641007 24644582 ECH