Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1516 ATGTCTTCTTCTTCTTCTATCTGGGTGTTATCTAACATAAAGCTTCGGTTCTTTACCCGGTTCAGACGGTTTCTCCGATCCAAAGCAACGACAAAGCGTTGTGACCCCTCTGATCGGTTTGACATGGCTAAAAGCAGAACTGAACACAACAACAAAGTTGAAATTATTGAAGTAGTTCAAGTTATGGAGAAACACAAGGAGGAGGAGGAGGAAGAGTCTTCAATCTTGTTGCAGAGGACAGTGAAGATGCTTCACTTTGGAAGTTGGGAAGAGAAGGAGGTTGCAGCGAAGGAGATTGAAAAGTTAGCTAAAGAGGGTGTGAAGGTTAGAAAGTTGATAACAGAACTTGGAGTGGTGCCGGTGTTGGTATCTATGGTGGCATCACCGGTGGCTAGTCGCCGGCGAGCAGGGTTAACGGCGTTGATCAACCTAGCTGATGGAACTTACTCGAACAAGGCTTTGATAGTGGAGGCTGGAATATTATCCAAGCTGCCTAGGACAATCGACCTTGTAGATGAATCAACAAATGAATGTGCTGAGTTGCTTTTGTCATTGTCATCTTTAGCAAATACCCAATTTCCTCTTGCTTCATTAGACTTTATCCCAATACTTAGAAGTATTCTTGAGATAGGCTCAAGTTTTGACATAAAAAAATTGTGTTTGGGTGCCTTATACAACCTATCAACTGTGTTAGAGAATGCAAGCCCTTTGGTTTCTAGTGGTGTTGTCCCTATCCTCTTGGAATTGTCCTTGGTAAAAGATATTTCGGAGAAAGCACTTGCCACTCTAGGGAACTTGTTAGTGACTTTGATGGGAAAGAAAGCAATAGAGAACAGCTCAATGGTGCCAGAAAGCTTTATTGAGATCTTGTCATGGGAAGACAAACCCAAATGCCAAGAGTTGTCAGTTTATATTTTAATGATTCTAGCACATCAAAGTTCATTGCAAAGAGAGAAAATGGCACAAGGTGGGATTGTTCATGTACTTCTTGAAGTGGTTTTATTGGGGAGCCCTTTAGCTCAGAAGAGAGCACAGAAACTATTACAATGGTTTAAGGATGAAAGGCAAACAAAAATGGGGCCACATTCTGGTCCACAAACGCCAAGATTTGCAATGGGATCACCCATAAATCAAAGAGATGCAAAAGAAGGGAAGAAAATGATGAAGAGTTTGGTGAAACAAAGCTTGCATAGGAATATGGAAATAATAACACAGAGAGCAAATGCAGCTGGGGAATCTTCTAAACTGAAGTCATTGATTATCAGCACAAGTTCCAAGAGTTTGCCTTACTAA 1293 0.413 MSSSSSIWVLSNIKLRFFTRFRRFLRSKATTKRCDPSDRFDMAKSRTEHNNKVEIIEVVQVMEKHKEEEEEESSILLQRTVKMLHFGSWEEKEVAAKEIEKLAKEGVKVRKLITELGVVPVLVSMVASPVASRRRAGLTALINLADGTYSNKALIVEAGILSKLPRTIDLVDESTNECAELLLSLSSLANTQFPLASLDFIPILRSILEIGSSFDIKKLCLGALYNLSTVLENASPLVSSGVVPILLELSLVKDISEKALATLGNLLVTLMGKKAIENSSMVPESFIEILSWEDKPKCQELSVYILMILAHQSSLQREKMAQGGIVHVLLEVVLLGSPLAQKRAQKLLQWFKDERQTKMGPHSGPQTPRFAMGSPINQRDAKEGKKMMKSLVKQSLHRNMEIITQRANAAGESSKLKSLIISTSSKSLPY* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1516 430 SUPERFAMILY ARM repeat 76 351 IPR016024 -
Apr1g1516 430 Gene3D - 45 412 IPR011989 -
Apr1g1516 430 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 66 430 - -
Apr1g1516 430 MobiDBLite consensus disorder prediction 357 384 - -
Apr1g1516 430 SMART arm_5 106 146 IPR000225 GO:0005515
Apr1g1516 430 SMART arm_5 148 187 IPR000225 GO:0005515
Apr1g1516 430 SMART arm_5 188 229 IPR000225 GO:0005515
Apr1g1516 430 SMART arm_5 230 268 IPR000225 GO:0005515
Apr1g1516 430 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 66 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1516 Apr-Chr1 24647497 24650558 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1516 90 368 U-box Gene Family AT1G67530 30.070 2.71e-19 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1516 - - gmx:100819002 655.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1516 1 24647497 24650558 Apr1g1516 1 24647497 24650558 ECH