Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1488 ATGCATTTCCTTTCAACTATTCCTCAAGCACTAGCAATGATTTGGCTCTTCTTCTATTTACACATCTCTCCTGTTCTCATTAGTGGCTACCCAAATGAAGCTACAAACACAGACAATAAAGTTATATCCATTGGAGCAATCATTGATGTTGATTCTCGCATTGGGAAAGAACAGCAAGTTGCCATGGATATTGCAACTCAACGTTACAACAGCACTTCAAAGACCTACAAATTGGCTCTCTATTTTCAGAACTCCACCAAGGATCCCCTCAGAGCCAGAACTCTTGCTGAAGAGATGATTAATATGCAGAAGGTGCAAGTGATTATAGGGATGCACACATGGCCAGAAGCAGCTCTAGTTGCTGAAATAGGAAGCCGAGCTCAAGTTCCTACCATAGCATTTGTAGAACCTGCCATTACCCCACGATTGATGAAAGTTAGATGGCCTTTTTTGGTGAGACTGGCTAACAGTGTTGCAGCATATATAGAATGCATTGCAGGTATAGTGCAAACTTATGGTTGGCAAAGAGTAGTTGCCATATATGAAGATGATGCATACGGGGGAGATTATGGCATGCTAGCACTGCTATCTGAGGCCCTTCAGGATATGGGTTCAATGATTGATTACCACTTAGCACTTCCACCTATTTCTTCTCTACATGATCCAGGAGAGTTTGTACATGAAGAGCTACTGAAGCTAATGCAAACACAATCTCGGGTGTTCATTGTGCTGCAATCTTCATTAGAAATGGTGATTCATTTGTTTAAAGAAGCCTCAAAATTGGGACTTGTGGACAGAGAATCAGCATGGATAATCCCAGAGAGCATAACTAATTTGCTAGAGTCTGTCAATAAGTCTGTTATTTCCTATATGGAAGGAGCTTTAGGAATCAAGACCTACTACTCTGAAAGAAGCACCGAGTATCAACATTTTGAGGCGCAGTTCCGAAGAACTTTTAGGCTCAAGAATGCCGAGGAAGATCACCGCTACCCAGGATTTTACGCTTTGCAAGCATATGATAGCATTAGCATTGTCACTCAAGCATTAGACAGAATGAGCAGTAAACACAAAAGTAGTCTTCCAAATACTTTACTAGGTGAAATATGCTCTAGCAGTTTCCTTGGTTTAAGTGGCCAAATTCAATTTGAAGCTGGGCAACTCTATCAGAATCCTATCTTAAGGATAGTAAATGTGGTTGGGAAGAGTTACAAGGAATTATGCTTTTGGACTCGACAACATGGGTTCACCACAAACCTCCCTACAGGACAGGGTCGGAAAAATGTTGCTGCCAATACAAAATGTTTGAGTGGTGTACATTGGCCTGGGAGTTTGCAGCAGGATCCAAAGGGTTGGAATATGCCTACTAAAAAAAATCCATTGAAAATTGCCGTCCGAAGCAGAACCTCATTTTCCAAGTTTGTCAAGGTTGATTATGATCAAAAGCAAAATTCTGCAAAGTATACTGGATTCTGCATTGATATTTTTCAGAGTGTTGTTAACCTTTTAGGGTATGACTTGCCTTATCAGTATTATCCTATCAGCGGAACCTATAATGATTTGGTTCAGCTAGTCAATAACAAGACTCATGATGCTGTTGTTGGGGACATGACCATACTAGAGGAAAGATTGCAGTATGTGGATTTTACTGTGCCATATGCAGAATCTGGATTGTCAATGATTGTTCCAGCGAAGTCTGAAGAGTCAGCATGGATGTTCACAAAGCCTTTTACCTGGGAATTGTGGGTGGTTACAGGTGCCATTTTGATTTACACAATGCTAGTAGTTTGGTATCTTGAAAGAGAATCCAATCCTGAGTTTCACGGCAATTGGAAGAGCCAGATCAGCACAGCTCTTTGGTTTACCTTCTCCTCTCTTTTCTTCGCTCATAGTGAGTATCTATCTCAAAATTCCTATAATGATTTTCACCATGCAGGGGAAAAAATGCATAGCAACTTAACTCGCGTGGTGATGGTCTCATGGCTTTTTCTGGTTCTGATTCTCAACTCCAGCTACACTGCTAGTCTTTCTTCAATGCTCACAGTCAAACAACTGCAACCAAATATCACAGACATTCAGTGGTTGAAGAGGAATAACATGAAAATTGGGTGTGATGGTGACTCATTCGTTAGGTTGTTCCTAGAAAAAGTAGAAAAGTTCAAGCCTGAGAACATCATAAACGTTAATGATGAATACAAGTATGTTGATGCATTCGAAAATAACACAATAGCAGCTGCCTTTCTTGAACTCCCATATGAGAAAGTATTCATTAGTGAATACTGCAACAGATACACTGGTTCCACTCCCAGAACAAGATTTGGAGGACTGGGCTTTATGTTCCAAAAAGGCTCACCAGTGACCAGAGACGTGTCAAAAGCTATATTACATCTCTCAGAAAATGCAGAATTGAAAAGATTGGAAGAAAAATGGTTGATTACCTCACATGACTGTTCCAACAACATGAACTCCAACAATACAGAAAGTTTGAATCTCAAAAGCTTATGGATTCTCTATGTCATCTCTGGTGCCACTTCCACTATTTGTCTGCTACTTCCAACCATCCAATGTCTATTATCCAATAAGCAATGTCAAGAAATAGCACCAGAAGGCTATGCCGCTACCAGTGTTTGGAAGGTGATAACACATGCGAAGAATATTTGTAGGAAAAAGCTCAATAATTCAAGTGAGACACAGGTTGTAACTGATTGTTCTTCGAGATCGGATCATGCGAGTATGACTGATTCCCCTGAGTATCAGTTGGATATGGCTTCTTCGGTACCTGCAATTTTAATGCTCTCTTCTCCACCACCAGAGGTACAGTTGACAACACATGATTTAGGAATCACTCACACTTCCAAGTAG 2859 0.4054 MHFLSTIPQALAMIWLFFYLHISPVLISGYPNEATNTDNKVISIGAIIDVDSRIGKEQQVAMDIATQRYNSTSKTYKLALYFQNSTKDPLRARTLAEEMINMQKVQVIIGMHTWPEAALVAEIGSRAQVPTIAFVEPAITPRLMKVRWPFLVRLANSVAAYIECIAGIVQTYGWQRVVAIYEDDAYGGDYGMLALLSEALQDMGSMIDYHLALPPISSLHDPGEFVHEELLKLMQTQSRVFIVLQSSLEMVIHLFKEASKLGLVDRESAWIIPESITNLLESVNKSVISYMEGALGIKTYYSERSTEYQHFEAQFRRTFRLKNAEEDHRYPGFYALQAYDSISIVTQALDRMSSKHKSSLPNTLLGEICSSSFLGLSGQIQFEAGQLYQNPILRIVNVVGKSYKELCFWTRQHGFTTNLPTGQGRKNVAANTKCLSGVHWPGSLQQDPKGWNMPTKKNPLKIAVRSRTSFSKFVKVDYDQKQNSAKYTGFCIDIFQSVVNLLGYDLPYQYYPISGTYNDLVQLVNNKTHDAVVGDMTILEERLQYVDFTVPYAESGLSMIVPAKSEESAWMFTKPFTWELWVVTGAILIYTMLVVWYLERESNPEFHGNWKSQISTALWFTFSSLFFAHSEYLSQNSYNDFHHAGEKMHSNLTRVVMVSWLFLVLILNSSYTASLSSMLTVKQLQPNITDIQWLKRNNMKIGCDGDSFVRLFLEKVEKFKPENIINVNDEYKYVDAFENNTIAAAFLELPYEKVFISEYCNRYTGSTPRTRFGGLGFMFQKGSPVTRDVSKAILHLSENAELKRLEEKWLITSHDCSNNMNSNNTESLNLKSLWILYVISGATSTICLLLPTIQCLLSNKQCQEIAPEGYAATSVWKVITHAKNICRKKLNNSSETQVVTDCSSRSDHASMTDSPEYQLDMASSVPAILMLSSPPPEVQLTTHDLGITHTSK* 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1488 952 CDD GluR_Plant 458 810 - -
Apr1g1488 952 PIRSF IGluLR_plant 9 928 IPR017103 -
Apr1g1488 952 Gene3D - 462 568 - -
Apr1g1488 952 Pfam Ligand-gated ion channel 811 841 IPR001320 GO:0015276|GO:0016020
Apr1g1488 952 SUPERFAMILY Periplasmic binding protein-like II 435 810 - -
Apr1g1488 952 SMART GluR_14 459 812 IPR001320 GO:0015276|GO:0016020
Apr1g1488 952 Gene3D - 751 817 - -
Apr1g1488 952 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 22 926 - -
Apr1g1488 952 Pfam Receptor family ligand binding region 59 398 IPR001828 -
Apr1g1488 952 CDD PBP1_GABAb_receptor_plant 43 419 IPR044440 -
Apr1g1488 952 Gene3D - 569 720 - -
Apr1g1488 952 Pfam Bacterial extracellular solute-binding proteins, family 3 481 810 IPR001638 -
Apr1g1488 952 Gene3D - 341 461 - -
Apr1g1488 952 Gene3D - 157 336 - -
Apr1g1488 952 Gene3D - 36 154 - -
Apr1g1488 952 SUPERFAMILY Periplasmic binding protein-like I 39 451 IPR028082 -
Apr1g1488 952 PANTHER GLUTAMATE RECEPTOR 3.4 22 926 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1488 Apr-Chr1 24329075 24333455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1488 25 861 Ion Channels AT2G29120 31.054 5.54e-139 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1488 - - gmx:100818619 1467.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1488 1 24329075 24333455 Apr1g1488 1 24329075 24333455 ECH