Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1482 ATGGTTTTATTTTCCCAATCCCAAACAGATTTACCCTTTAACGAGAATGACTCACAGGACATGGTCATATACCAAGTTCTCAACGAAGCCAATGCTCTCACCAACACATTTCTACCACAGAGGCTCCACCAACCACAGCACGGCTTAGAAGCCACAAGAAACATAGCCAAGAAGCACTATAGAGGGGTTCGGCGCCGCCCGTGGGGGAAGTACGCCGCCGAGATTCGCGACTCGGCGCGCCACGGAGCCAGAATATGGCTTGGCACATTCCAAACGGCTGAAGAAGCCGCCATGGCTTACGACCGAGCCGCTTTCAAAATGAGGGGTGCTAAGGCCTTGCTGAATTTCCCAGCTGATGTTGTTGCTGCAGCTTCCAAGGAGATGGAGCTATCTTCTAAGCTCGATATGAATAATCACGATTCTGTTTCTGATTCAAGTGCTAGTAGCTCTTGCACAAATTCCACTCAGGTAAACAAGTCACAGTTAGAAAGCACAAGTAGCACAAGCTAG 510 0.4922 MVLFSQSQTDLPFNENDSQDMVIYQVLNEANALTNTFLPQRLHQPQHGLEATRNIAKKHYRGVRRRPWGKYAAEIRDSARHGARIWLGTFQTAEEAAMAYDRAAFKMRGAKALLNFPADVVAAASKEMELSSKLDMNNHDSVSDSSASSSCTNSTQVNKSQLESTSSTS* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1482 169 PANTHER DNA-BINDING DOMAIN 6 137 IPR044808 GO:0003700|GO:0009873
Apr1g1482 169 ProSiteProfiles AP2/ERF domain profile. 59 117 IPR001471 GO:0003700|GO:0006355
Apr1g1482 169 PANTHER PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI5 6 137 - -
Apr1g1482 169 SUPERFAMILY DNA-binding domain 59 119 IPR016177 GO:0003677
Apr1g1482 169 MobiDBLite consensus disorder prediction 135 169 - -
Apr1g1482 169 MobiDBLite consensus disorder prediction 132 169 - -
Apr1g1482 169 Gene3D AP2/ERF domain 58 119 IPR036955 GO:0003700|GO:0006355
Apr1g1482 169 Pfam AP2 domain 59 109 IPR001471 GO:0003700|GO:0006355
Apr1g1482 169 SMART rav1_2 59 123 IPR001471 GO:0003700|GO:0006355
Apr1g1482 169 CDD AP2 58 119 IPR001471 GO:0003700|GO:0006355
Apr1g1482 169 PRINTS Ethylene responsive element binding protein signature 60 71 IPR001471 GO:0003700|GO:0006355
Apr1g1482 169 PRINTS Ethylene responsive element binding protein signature 83 99 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1482 Apr-Chr1 24256961 24258123 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1482 4 120 AP2-EREBP Transcription Factor Family AT4G17500 47.586 3.31e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr1g1482 AP2 5.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1482 K13433 - gmx:100811533 240.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1482 1 24256961 24258123 Apr1g1482 1 24256961 24258123 ECH