Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1481 ATGGCTTCTTCTAATAGACACTGGCCAAGCATGTTCAAGTCTAAGCCCTGCAACCCTCATCACCAATGGCAGCATGACATCAACTCCTCTCTCATCTCAACCGGTTGCCATAGAAGCCCTTACACTTCAGGAGCTGGTTGTGAGGAGAGAAGTCCAGAGCCAAAGCCAAGGTGGAATCCAAAACCAGAGCAAATTCGCATATTGGAAGCTATATTCAACTCTGGAATGGTGAATCCTCCGAGGGATGAGATAAGGAAGATAAGGGCACAATTGCAAGAGTATGGCCAAGTGGGTGATGCTAATGTCTTCTATTGGTTCCAGAACCGCAAATCCAGGAGCAAGCACAAGCTTCGCCATCTCCAGAACTCAAAGAACCACAACCCTGAAACCCAACAAAACCCAGTTTCTATCCCCCAAATCACTGCACCTTCATCCTCATCTTCCTCCTCAGAGAAATCTCCCCCCAAAGAAATGATACCCACCAAGGTGTTTTCCATTGGATTCTCTAATGTCACCGATATGGTTCCCAATTCTCCCACCAACTCCGTTAACCAGACCTATTTTCAGACCCAAAATGAGACCACTCTCCTTTCACCAGCACCACCCCCTGCTACTTCTGCCGTAGCTGAGGCTTACTTCTTCCCAGTGCAACATCATGGGCATGGAGTGGTGCTACCTAGTGCCGTGACATCACAAGGGTTTTGCTTCTCGGAGCTGTCCAATGTTGTTCAAGCTCAATCACATGGTCAACATAATGTTGGTCCTTGCACTAGTCTTTTGCTTAGTGAGATCATAAGCCATGGTGCTGCTGCCTCAAAGAAAGATCTAGACCAAGACAAGTCTCTGAAAATTATGCACCAACCTTCTCAGCTTAATTTCTGTGTCTCTCACACAACAACAGCTCCTACTACTGCGACTGTTGTACCTCCCATTACTGCCACCACCACTACTGTTCCATCCCCCGTCATTGCTCATGTACTTCAAGGCGTTGGTGATCCAGCTGTTACGCCGAGATCAACGGTGTTCATAAACGATATGGCATTTGAGGTAGCGGTGGGACCTTTCAACGTGCGTGAGGCCTTCGGAGATGATGCTGTGCTCATCCATGCCACTGGTCAACCAGTTCTAACAAACCAATGGGGCATCACTCTTCAGTCACTTCAGCATGGTGCATGCTATTATTTGAGAGTTTCTGACTTTGCGGTCACATGGATGGAGGTGATGTTTGGTTTGGAACGGACTATAATTCAGCATATTGGTGTTGTGGTGCCTTGCTTTGTGGCCACATCACCCACCAAGGACGAGGGTGTTAGGTAA 1317 0.4776 MASSNRHWPSMFKSKPCNPHHQWQHDINSSLISTGCHRSPYTSGAGCEERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHLQNSKNHNPETQQNPVSIPQITAPSSSSSSSEKSPPKEMIPTKVFSIGFSNVTDMVPNSPTNSVNQTYFQTQNETTLLSPAPPPATSAVAEAYFFPVQHHGHGVVLPSAVTSQGFCFSELSNVVQAQSHGQHNVGPCTSLLLSEIISHGAAASKKDLDQDKSLKIMHQPSQLNFCVSHTTTAPTTATVVPPITATTTTVPSPVIAHVLQGVGDPAVTPRSTVFINDMAFEVAVGPFNVREAFGDDAVLIHATGQPVLTNQWGITLQSLQHGACYYLRVSDFAVTWMEVMFGLERTIIQHIGVVVPCFVATSPTKDEGVR* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1481 438 MobiDBLite consensus disorder prediction 39 62 - -
Apr1g1481 438 MobiDBLite consensus disorder prediction 114 157 - -
Apr1g1481 438 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 397 - -
Apr1g1481 438 MobiDBLite consensus disorder prediction 124 155 - -
Apr1g1481 438 Gene3D - 55 121 - -
Apr1g1481 438 SUPERFAMILY Homeodomain-like 51 119 IPR009057 -
Apr1g1481 438 Pfam Homeodomain 55 115 IPR001356 GO:0003677
Apr1g1481 438 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 397 IPR044557 GO:0003700|GO:0050793
Apr1g1481 438 ProSiteProfiles 'Homeobox' domain profile. 51 116 IPR001356 GO:0003677
Apr1g1481 438 CDD homeodomain 54 116 IPR001356 GO:0003677
Apr1g1481 438 SMART HOX_1 53 120 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1481 Apr-Chr1 24220687 24225106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1481 1 395 Wox Gene Family AT5G45980 37.317 2.36e-73 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Apr1g1481 Homeodomain 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1481 - - mtr:MTR_2g015000 549.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1481 1 24220687 24225106 Apr1g1481 1 24220687 24225106 ECH