Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1478 ATGAACCAACGACATAAAATGATTCTTCTGCTGCTGTTTCTTTTTCAATTTCTTCTTGTAGCAGCTCAGACAGACAGTAGAGACTATGCTGGCCTAACATCTCTCACGCAATCCTGGACTAACAAACCAGCAAGTTGGGTGGGAACAGATCCTTGCGGCAGTAGTTGGGATGGGATTCGTTGCACCAATTCAAGAATTACACAATTGAAATTACCAGGCTTGAATTTGGGGGGCCAGCTTTCTTCGGCAATCCAGTCTTTGACTGAACTAGACACTGTGGATCTTTCTTACAACACGGGCTTGACAGGAACAATTCCACAAGAAATTGGGAATTTGAAAAAGCTAAAATCCCTAGCATTGGTTGGTTGTGGTTTCAATGGTCCTATTCCAGATTCAATTGGATCTTTAAAGCAGCTAAACTTTCTAGCACTGAATTCTAATAAGTTCAGTGGAAATATACCACGCGCTTTTGGCAATCTGTCAAATATTAATTGGCTTGATCTTGCTGAAAACCAACTTGAAGGGCCTATTCCTGTATCTGATAACCAAGGACGACTAGGACTTGACCTGCTCCTTAATGCCCAACACTTCCATATGGGGACCAATAAGCTCTCTGGTCAAATACCAGCAAAACTTTTTAACTCCAATATGAAACTGGAACATGCGCTTTTTGATGACAATCAACTAGAGGGTAGTATTCCTAGCACCATTACTCTTGTGAGCACATTGGAGGTGGTGCGCTTTGATAGGAACAAGTTAAGTGGGGCAGTGCCTTCTAATTTCAGCACACTTGGGAAACTTAGTGAGCTCTATTTAGCTCACAATAACCTGAATGGCTCTCTGCCGGATCTTAGTGGAATGAATAGTCTCACCTATGTGGATCTGAGCAACAATAGTTTCAGTTCTTCTACTATTCCTTCATGGGTTTCAAGTCTGCCAGTGCTGACAACAGCGATACTCGGGGACAACCAGCTCAGTGGCACATTAAACCTTAGCAATGGCTACAGCGACAGTCTGCAACTCATTAATTTGGAGGATAATCAAATAACCAATCTCCAGCCAAGTAATAAAATACCAAATTTTCAGCTAATACTAGCTAACAATCCAATTTGCCTTGAAAGTGGAGCTTCTCAAATAAGTTACTGCCAAGTGCCCCAAACCATTCCCTCATATTCAACACCAACAAATAATTGTGCACCTCCATCATGCAGTTCTAATCAGATTTTTAGCCCCAACTGTAAATGTGCATTTCCTTATACTGGAGTTCTGTCATCCAGAGCTCTTAGTTTCTCAAATTATAGCAACACAAGCTACTATAAGGATCTTGAGCAGACTCTGCTGAATGCTTTTCGTGCACAACATATTCCAGTGGATTCAGTTTCTCTTAGTAACCCCTTCAGAAATTCAACTTCTGATAATTTTCAGCTGACTTTAGATGTCTTCCCAGCTCAAAGTGATCGTTTCAATGCAACGGGAGTTTTAAGTATTGCTTTTATGCTTAGCAACCAAATTTACAAACCACCAGAATTTTTCTCCCCTTATGTCTTCAGGGGCAATAATTATGAATTCTATGGAGGAGAATCAAAAGGATCAAAGTCAAGCGGCACAGGAGTTATAGTTGGTGCAGTCATTGCTGCTTTGGTCTTCATTGTACTAGCTCTCTTTGCAGGAATATATGCCATCCGCCAAAAAAGAATAGCAAAAAGATCTGCAGAGTTGAACCCTTTTGTAAATTGGGAACAAAACAAGAATAGTGGCACTGCTCCTCAGTTGAAAGGATCACGATGGTTTTCTTTTGATGACCTAAAGAAATACACCAACAACTTCTCAGAAGCCAACACTATTGGATCTGGAGGCTATGGAAAGGTTTATCAAGGTGTTCTACCCTCTGGGGACTTGGTTGCTATCAAACGGGCTGCACAAGAATCTATGCAGGGTGCTGTTGAGTTTAAAACCGAGATTGAACTTCTATCAAGGGTCCATCATAAGAATCTCGTTGGTCTTGTGGGTTTCTGTTTTGAGAAGGGTGAACAAATGTTGGTGTACGAGTACATTCCAAATGGCACTGTAATGGATAGTCTATCAGGAAAGTCTGGGATCTGGATGGATTGGGTACGGAGGCTGAAAGTAGCATTGGGTGCAGCCAGGGGTCTGGCCTATCTTCATGAACTTGCTAACCCACCAATCATACACAGGGACATAAAATCAAGCAATATCCTACTTGATAATCACCTCAATGCAAAAGTTGCAGATTTTGGTCTCTCCAAACTTCTTGTTGATAGTGAGAGGGGCCATGTTACTACTCAAGTCAAAGGGACAATGGGATACTTGGATCCGGAATACTACATGACTCAGCAGTTGACTGAAAAGAGTGATGTTTATAGCTTTGGAGTGCTAATGCTTGAACTAATAACAGCAAGAAGGCCTATAGAGCAAGGAAAGTATATTGTAAGAGAGATAAGGAGGGTAATGGACACATCAAAAGATTTATACAACCTTCATTCCATTCTAGATCCAACCGTAATAAAACAAACAAGACCAAAAGGTTTAGAAAAGTTTGTGATCTTGGCAATGAGGTGTGTCAAAGAATATGCTTCTGAGAGACCTACAATGGCTGAAGTTGTGAAAGAGATTGAGAACATAATCGAGCTTGTTGGATTGAACCCCAATGCTGAATCAGCTTCAGCATCAGAAACCTATGAGGAAGTGAGTGGAGGAAATGTTAAACATCCTTATGGCGACGAAGATTTTAGCTATAGTGGAATCTTTCCATCAACAAAGGTTGAACCTCAATAA 2796 0.4102 MNQRHKMILLLLFLFQFLLVAAQTDSRDYAGLTSLTQSWTNKPASWVGTDPCGSSWDGIRCTNSRITQLKLPGLNLGGQLSSAIQSLTELDTVDLSYNTGLTGTIPQEIGNLKKLKSLALVGCGFNGPIPDSIGSLKQLNFLALNSNKFSGNIPRAFGNLSNINWLDLAENQLEGPIPVSDNQGRLGLDLLLNAQHFHMGTNKLSGQIPAKLFNSNMKLEHALFDDNQLEGSIPSTITLVSTLEVVRFDRNKLSGAVPSNFSTLGKLSELYLAHNNLNGSLPDLSGMNSLTYVDLSNNSFSSSTIPSWVSSLPVLTTAILGDNQLSGTLNLSNGYSDSLQLINLEDNQITNLQPSNKIPNFQLILANNPICLESGASQISYCQVPQTIPSYSTPTNNCAPPSCSSNQIFSPNCKCAFPYTGVLSSRALSFSNYSNTSYYKDLEQTLLNAFRAQHIPVDSVSLSNPFRNSTSDNFQLTLDVFPAQSDRFNATGVLSIAFMLSNQIYKPPEFFSPYVFRGNNYEFYGGESKGSKSSGTGVIVGAVIAALVFIVLALFAGIYAIRQKRIAKRSAELNPFVNWEQNKNSGTAPQLKGSRWFSFDDLKKYTNNFSEANTIGSGGYGKVYQGVLPSGDLVAIKRAAQESMQGAVEFKTEIELLSRVHHKNLVGLVGFCFEKGEQMLVYEYIPNGTVMDSLSGKSGIWMDWVRRLKVALGAARGLAYLHELANPPIIHRDIKSSNILLDNHLNAKVADFGLSKLLVDSERGHVTTQVKGTMGYLDPEYYMTQQLTEKSDVYSFGVLMLELITARRPIEQGKYIVREIRRVMDTSKDLYNLHSILDPTVIKQTRPKGLEKFVILAMRCVKEYASERPTMAEVVKEIENIIELVGLNPNAESASASETYEEVSGGNVKHPYGDEDFSYSGIFPSTKVEPQ* 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1478 931 PANTHER RECEPTOR-LIKE KINASE FAMILY PROTEIN, PUTATIVE-RELATED 2 911 - -
Apr1g1478 931 SUPERFAMILY Protein kinase-like (PK-like) 587 877 IPR011009 -
Apr1g1478 931 CDD STKc_IRAK 615 881 - -
Apr1g1478 931 PANTHER RECEPTOR-LIKE PROTEIN 55 2 911 - -
Apr1g1478 931 ProSitePatterns Protein kinases ATP-binding region signature. 615 637 IPR017441 GO:0005524
Apr1g1478 931 Gene3D Transferase(Phosphotransferase) domain 1 685 897 - -
Apr1g1478 931 SUPERFAMILY L domain-like 42 389 - -
Apr1g1478 931 Gene3D Ribonuclease Inhibitor 185 411 IPR032675 -
Apr1g1478 931 Pfam Leucine rich repeat 242 299 IPR001611 GO:0005515
Apr1g1478 931 Gene3D Ribonuclease Inhibitor 26 184 IPR032675 -
Apr1g1478 931 Pfam Protein kinase domain 610 876 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1478 931 ProSitePatterns Serine/Threonine protein kinases active-site signature. 729 741 IPR008271 GO:0004672|GO:0006468
Apr1g1478 931 Gene3D Phosphorylase Kinase; domain 1 579 684 - -
Apr1g1478 931 SMART serkin_6 609 882 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1478 931 ProSiteProfiles Protein kinase domain profile. 609 882 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1478 931 ProSiteProfiles Leucine-rich repeat profile. 338 359 IPR001611 GO:0005515
Apr1g1478 931 ProSiteProfiles Leucine-rich repeat profile. 266 288 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1478 Apr-Chr1 24197848 24205955 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1478 8 931 Receptor kinase-like Gene Family AT5G49760 52.681 0.0 949
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Apr1g1478 Pkinase 2.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1478 - - gmx:100786172 1477.23