Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1469 ATGGATATCAACCAAGTGAAGGGAGCTGAAGAGTTGTTTCAGGCTCAGGCCCATGTATATAACTATACTTATAGTTACATTGGTGCCATGTGCCTCAAAAGTGCAGTTCATTTGGGAATACCAGACATAATCTACAAACATGGCCAACCCATTACTATACCTGAGCTGGTCTTGGCACTTAAGATTCACCCTACTAAATCTGGTCATGTGCACAGGCTTATGCGTTTGCTGGTGCATGCTGGCTTCTTTGCTACAACCAAGGTTATAAAAGATGCCAAAGAAGAAGCGGTGTATGATCTCACACCTTCCTCTAAGCTTCTCGTCAAAGAGAATGTTCCAACCTTGTCTCCTTTTGTTCGGGCAATGTTTCATCCTGCTCTCGTTCACTCATCAGAATTCTTGGCTGAGTGGTTTCACAGAGATGAGCACACACCCTTTCACACTGCATTTGGCACTGGTTACTGGGACTACTTGAGCCAAAACCAAGAGTTTAATAGCCTCTTCAATGAAGCAATGATTAGTGATTCTGGGATGATCAATTTGGTGATCAAAGATTGCAAATCTGTCTTTGAGGGATTGAATTCATTGGTTGATGTTGGAGGTGGGAAAGGAGGTGTAGGTAGGATAGTTTCTGAGTCCTTTCCTAATTTGCATTGGACTGTGCTAGATCTTCCACATGTGGTTGAAAATTTGTCAGATAGCAGCTATTTGAAGTTTGTTGGAGGTGACATGTTTCAGTCTATTCCTTCAGCAGATGCCATTCTTCTCAAGTTGGTGTTGCATGCTTATAGTGATGAAGACTGCGTTAAGGTACTGAAGAAATGCAGAGAAGCTATTTCAAGCAAGGGTAAGGAAGGGAAAGTGATTATCATAGACATAGTGATCGGTGAGAAGAATGAAAAGCATGAACTGACAGAAGCAAAGCTGTTTTTTGATGTGTTAATGATGGTTCTGGTGAGTGGAAGAGAGAGAGAAGAAAAAGAATGGGAGAAACTCTTCTTGGAAGCTGGATTCAGTCATTACAAGGTAACACCCATCTTTGGTATGAGGTCACTGATTGAAGTTTATCCTTGA 1074 0.4171 MDINQVKGAEELFQAQAHVYNYTYSYIGAMCLKSAVHLGIPDIIYKHGQPITIPELVLALKIHPTKSGHVHRLMRLLVHAGFFATTKVIKDAKEEAVYDLTPSSKLLVKENVPTLSPFVRAMFHPALVHSSEFLAEWFHRDEHTPFHTAFGTGYWDYLSQNQEFNSLFNEAMISDSGMINLVIKDCKSVFEGLNSLVDVGGGKGGVGRIVSESFPNLHWTVLDLPHVVENLSDSSYLKFVGGDMFQSIPSADAILLKLVLHAYSDEDCVKVLKKCREAISSKGKEGKVIIIDIVIGEKNEKHELTEAKLFFDVLMMVLVSGREREEKEWEKLFLEAGFSHYKVTPIFGMRSLIEVYP* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1469 357 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 357 IPR016461 GO:0008168
Apr1g1469 357 PANTHER O-METHYLTRANSFERASE 7 357 IPR016461 GO:0008168
Apr1g1469 357 Gene3D Vaccinia Virus protein VP39 108 357 IPR029063 -
Apr1g1469 357 SUPERFAMILY "Winged helix" DNA-binding domain 10 110 IPR036390 -
Apr1g1469 357 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 114 356 IPR029063 -
Apr1g1469 357 Pfam O-methyltransferase domain 134 339 IPR001077 GO:0008171
Apr1g1469 357 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Apr1g1469 357 Gene3D - 2 107 IPR036388 -
Apr1g1469 357 PANTHER ASMT2 7 357 - -
Apr1g1469 357 PIRSF O-mtase 1 357 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1469 Apr-Chr1 24135870 24137413 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1469 30 355 Monolignol Biosynthesis Gene Families AT5G54160 33.531 9.00e-49 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1469 K22588 - qsu:112018723 489.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1469 1 24135870 24137413 Apr1g1469 1 24135870 24137413 ECH