Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1460 ATGCCTCGCACTCTGCTGGTTCTGCTCCTTTTACTCTTGGGACCTCCCATCGTGTCGTGTCTAAACCAAGAGGGCCTCTACCTCTACCAGTTGAAGCTATCACTGGACGACCCTGACTCCTCCCTCTCCACATGGAACAACCGCGACCCAACTCCGTGTAACTGGGCTGGCCTCACCTGCGACTCAACCAACACCACCGTAACATCGCTCGACCTCTCCAACTTCAACATCGCAGGCCCATTTCCCGCTTCACTTCTCTGTCGCCTACCAAACCTCACCTCCATAATCCTCTTCAACAACTCCATCAACCAAACACTCCCTCTCGACATCTCCCTCTGTACCTCTCTCCTCCACCTCGACCTCTCCCAAAACCTCCTCACGGGTGCACTCCCCCACACCCTATCCCTCCTCCCCAATCTCCGCTACCTAGACTTAACCGGCAACAACTTCTCCGGCCCCATCCCTCACTCCTTCGGAACCTTCCAGAACCTCCAAGTCCTCTCCCTCGTTAACAACCTCCTAGACGACACCGTTCCACCTTCTCTCTCCAACATAACCACTCTCAAAGTCCTCAACCTCTCTTACAACCCCTTTCTCCCCTCTCAGATCCCTCCAGAACTCGGCAACCTCACCAACCTCGAGATCCTCTGGCTCAGTTCCTGCAATCTCGTCGGTCCCATCCCTCACTCGCTCGGGAATCTCAACAACCTTCTCGACTTGGACCTCTCGTTCAATAACCTCTATGGCTCGATTCCGAGTTCTCTCACTCGAATGACCAGTCTGAAACAGATTGAATTGTATAACAACTCGCTGTCCGGCGAGTTGCCTCGGGGAATATTCAACCTCACCGCATTGAGGCTCATTGATGTGTCTATGAACCATTTGAGTGGCCCCATTCCCGATGAGTTGTGTCGTTTACCGCTTGAGAGTCTTAACCTTTACGAGAACCGGTTCGAGGGCGAGTTGCCCGCGAGTATTGCCGACTCGCCCAACCTTTATGAACTGAGGTTGTTTGGCAACAGGCTCGCCGGGAAGTTGCCGGAGAATCTCGGCAAGAATGCTCCGTTGAGGTGGCTTGATGTTTCCAACAACCATTTTTCGGGGGGGATTCCGGCCAGTCTCTGCGATAACGGCGAGTTGGAGGAGATTCTCATGATTGAGAACTCGTTCTCCGGGGAAATTCCGGCGAGTCTGGGCGCGTGCCAGAGTTTGATGCGTGTCAGGCTTGGGTCGAATCGGTTGTCCGGCGAGGTTCCGGCAGGTTTGTGGGGTCTTCCGCATGTGTATTTGCTTGAACTGGTGGATAACTCGTTCACTGGTCCAATCGCGAAGACCATCGCTGGGGCGAGGAATCTGTCGCTGTTGATTTTATCGAACAACAGTTTCTCGGGAGTGATCCCCGACGAGATTGGATGGGTGGAAAATCTTCAGGAGTTTTCGGGTGGTGATAACATGTTCAATGGGTCGATGCCTGAGACTATTGTGAATCTTGGGCAACTTGGGACTCTTGATCTTCATAACAATAGGCTCTCTGGGGAGCTTCCAAAGGGGATTCAATCATGGAAGAAACTCAACGAGTTGAATTTGGCTGATAATGAGATTGGTGGGAATATTCCTGATGGAATTGGGAGTTTGTCTGTGCTTAATTTTCTTGATCTTTCCAATAACCAGTTTTCAGGGAATGTCCCTCTGGGTTTGCAGAATTTGAAGCTCAATCAGCTCAATTTGTCTTATAATAAACTTTCTGGAGGACTTCCCCCTCTGCTGGCTAAGGATATGTACAGGGATAGTTTTATGGGTAATCCTGGTCTGTGTGGAGATTTGAAAGGTTTGTGCAATGGCAAAGGTGATGATAAGAGTAAAGGTTTTGTGTGGTTGCTTCGAACTATTTTCATAGTTGCCACTTTGGTGTTTGTCGTTGGTGTGGTGTGGTTCTACTTCAAGTACAGGAATTTCAAAAATGCTAGGAGATCTATTGATAAATCGAAGTGGACATTGATGTCGTTTCATAAACTGGGTTTCGGTGAAGATGAGATCTTGAACTGCCTTGATGAAGATAATGTGATAGGAAGTGGGTCGTCGGGGAAAGTTTACAAGGTTGTGCTTAGCAGTGGGGAAGCTGTTGCTGTGAAGAAGATATGGGGTGGGGTCAAAAAGGAATTAGATAGTGGAGATGTTGAAAAGGCTCAGTTTCAAGACAGTGCTTTTGACGCAGAGGTTGAAACTTTGGGCAAAATAAGGCACAAGAACATTGTCAAGCTGTGGTGTTGCTGCACTACTAGGGATTGCAAGTTGTTGGTGTATGAATATATGCCGAATGGTAGTCTGGGTGATTTGCTGCATAGTAGTAAAGGAGGGTTGTTGGATTGGCCAACCAGGTATAAGATAGCTGTTGATGCTGCAGAAGGCCTCTCTTATTTGCATCATGACTGTGTTCCCCCAATTGTTCATAGAGATGTGAAATCTAATAACATCTTGTTGGATGGGGACTTTGGTGCAAGAGTGGCAGACTTTGGAGTAGCTAAGGTTGTCGAATCCACCGGGAAAGGAACTAAATCCATGTCCGTCATAGCTGGGTCTTGTGGGTATATTGCACCAGAATATGCATACACGCTTAGAGTGAATGAGAAGAGTGACATATATAGTTTCGGTGTTGTCATACTTGAGTTGGTTACGGGAAGGCGACCCATAGACCCTGAATTTGGGGAAAAAGACTTGGTTATGTGGGTATGCACCACCTTGGATCAGAAAGGCGTGGACCATGTGCTTGACCCCAGGCTTGATTCTTGTTTCAAAGAAGAAATTTGCAAGGTCCTCAACATTGGCCTCATGTGCACTAGTCCTCTTCCAATCAACCGGCCTGCGATGAGGAGGGTGGTGAAGATGTTACAAGAGGTGGGTACAGAGAACCTAACGAAACCTGCCAAGAAAGATGGAAAGTTGTCCCCTTATTACTATGATGATGGGTCAGATCATGGAAGTGTTGCTTAA 2991 0.4841 MPRTLLVLLLLLLGPPIVSCLNQEGLYLYQLKLSLDDPDSSLSTWNNRDPTPCNWAGLTCDSTNTTVTSLDLSNFNIAGPFPASLLCRLPNLTSIILFNNSINQTLPLDISLCTSLLHLDLSQNLLTGALPHTLSLLPNLRYLDLTGNNFSGPIPHSFGTFQNLQVLSLVNNLLDDTVPPSLSNITTLKVLNLSYNPFLPSQIPPELGNLTNLEILWLSSCNLVGPIPHSLGNLNNLLDLDLSFNNLYGSIPSSLTRMTSLKQIELYNNSLSGELPRGIFNLTALRLIDVSMNHLSGPIPDELCRLPLESLNLYENRFEGELPASIADSPNLYELRLFGNRLAGKLPENLGKNAPLRWLDVSNNHFSGGIPASLCDNGELEEILMIENSFSGEIPASLGACQSLMRVRLGSNRLSGEVPAGLWGLPHVYLLELVDNSFTGPIAKTIAGARNLSLLILSNNSFSGVIPDEIGWVENLQEFSGGDNMFNGSMPETIVNLGQLGTLDLHNNRLSGELPKGIQSWKKLNELNLADNEIGGNIPDGIGSLSVLNFLDLSNNQFSGNVPLGLQNLKLNQLNLSYNKLSGGLPPLLAKDMYRDSFMGNPGLCGDLKGLCNGKGDDKSKGFVWLLRTIFIVATLVFVVGVVWFYFKYRNFKNARRSIDKSKWTLMSFHKLGFGEDEILNCLDEDNVIGSGSSGKVYKVVLSSGEAVAVKKIWGGVKKELDSGDVEKAQFQDSAFDAEVETLGKIRHKNIVKLWCCCTTRDCKLLVYEYMPNGSLGDLLHSSKGGLLDWPTRYKIAVDAAEGLSYLHHDCVPPIVHRDVKSNNILLDGDFGARVADFGVAKVVESTGKGTKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGRRPIDPEFGEKDLVMWVCTTLDQKGVDHVLDPRLDSCFKEEICKVLNIGLMCTSPLPINRPAMRRVVKMLQEVGTENLTKPAKKDGKLSPYYYDDGSDHGSVA* 997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1460 996 Gene3D Phosphorylase Kinase; domain 1 667 770 - -
Apr1g1460 996 SMART serkin_6 683 985 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1460 996 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 6 978 - -
Apr1g1460 996 Pfam Protein kinase domain 685 902 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1460 996 Pfam Leucine rich repeat 114 150 IPR001611 GO:0005515
Apr1g1460 996 SUPERFAMILY L domain-like 308 589 - -
Apr1g1460 996 Gene3D Transferase(Phosphotransferase) domain 1 771 984 - -
Apr1g1460 996 SUPERFAMILY L domain-like 36 374 - -
Apr1g1460 996 Pfam Leucine rich repeat N-terminal domain 22 61 IPR013210 -
Apr1g1460 996 ProSitePatterns Serine/Threonine protein kinases active-site signature. 815 827 IPR008271 GO:0004672|GO:0006468
Apr1g1460 996 ProSiteProfiles Protein kinase domain profile. 683 971 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1460 996 SUPERFAMILY Protein kinase-like (PK-like) 679 963 IPR011009 -
Apr1g1460 996 ProSitePatterns Protein kinases ATP-binding region signature. 689 712 IPR017441 GO:0005524
Apr1g1460 996 PANTHER LRR RECEPTOR-LIKE KINASE 6 978 - -
Apr1g1460 996 Gene3D Ribonuclease Inhibitor 383 612 IPR032675 -
Apr1g1460 996 Gene3D Ribonuclease Inhibitor 180 382 IPR032675 -
Apr1g1460 996 Gene3D Ribonuclease Inhibitor 21 179 IPR032675 -
Apr1g1460 996 SMART LRR_typ_2 258 282 IPR003591 -
Apr1g1460 996 SMART LRR_typ_2 185 210 IPR003591 -
Apr1g1460 996 SMART LRR_typ_2 137 163 IPR003591 -
Apr1g1460 996 SMART LRR_typ_2 497 520 IPR003591 -
Apr1g1460 996 SMART LRR_typ_2 89 113 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1460 Apr-Chr1 24019695 24024352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1460 16 996 Receptor kinase-like Gene Family AT1G28440 69.939 0.0 1417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Apr1g1460 Pkinase 6.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1460 - - gmx:100776936 1683.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1460 1 24019695 24024352 Apr1g1460 1 24019695 24024352 ECH
Apr1g1460 1 24019695 24024352 Apr3g1020 3 24981045 24984747 ECH