Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1457 ATGGAGGCCGAGGTGGAGAACGACGCGATGAAGAGGGAAGATGCGGGTGATAACAGCAATGACAACAACAACAACAATGGAAGTAACAGCAAAATTGTGAATTCCAGTGAGGGTCAGAGCAAGCCCAAGCGCCAGATGAAGACTCCTTTTCAACTTGAAACGCTCGAGAAAGCTTATGCTTTGGAGAATTACCCATCGGAGTCGATGAGGGCGGAGCTGTCGGAGAAGTTGGGGTTGTCGGATCGGCAGTTGCAGATGTGGTTCTGTCACCGGCGGTTGAAGGACAAAAAGGACTTGCCGTCAAAGAAGCCTCGTAAGGTGGCGACTTTGCCGGATTCTCCGGCTGATGAGCCCAGGTTGGGTCCTGAACCGGGTAATGATTACGGATCCGGGTCGGGTTCAGGGTCCAGCCCGTTTACCCGTTCGGAGTTGCGGAATGTGGTGCCACGGGGGTACTATGAGTCACCACAGACTATAATGGAGCTTAGAGCAATTGCTTGCGTGGAGGCTCAGTTAGGGGAGCCTTTGAGGGAAGATGGACCTATTCTTGGAGTGGAGTTTGATCCGTTGCCACCAGATGCATTCGGGGCACCCTTAGCTGTTACAGAACAGCAGAAGCGGCCTAGTCTGGCCTATGACAGCAAAATATACGAAAGACATGATGTTAGAACCAATAAGGCAATGGCAAGGACGTTCCCTGAATATCCTTTTCTTCCAAACCAGTCTGGCATTAGACCTGATGTTTTTGGACAATTGAGCCAAGCTCATTTACATGATCCAGTGGAGGGTCCTGCCAGAACTCCTTTTCCCCTTGGAAATGAACAACTACCTAGGATTCATGCTACCCCCAGTCATTCTTCTCGTGTTCGCCTTTTGTCTCAACAGGACAAGCAAGGGATTCCATATCCGTCTCCTCCTCGAGACAATGATGTTGCTCCCCAAAGGGAAGCTCACACAAACATAACCAGTACTGGAATGAACTCCCACTTTACAGATCACCCAATTGGACAAGAAAATCAGTATGCCTTACCTGGTGGACAAGTTTTCCATAATGATGCAATATTGCGGATGGAGAGGAAAAGAAAGAGTGATGAAGCTAGAGTTGCAAGGGAAGTTGAAGCCTATGAAATGAGGATGCGGAAAGAGCTTGAGAAACAAGATAACCTTAGACGAAAGAGTGAAGAACGGTTGAGGAAAGAAATGGAAAGACAAGATCGTGAAAGAAGGAAGGAAGAGGAGAGGTTGATGCGAGAGAAACAACGAGAAGAGGAAAGATCAAAGCGTGAGCAAAGGCGGGAAATGGAACGCAGGGAAAAATTTTTGCTGAAAGAACATTTGCGAGCTGAGAAAAGGAGGCAAAAAGAAGAGATCCGCAAAGAGAAAGAGGCAGAGAGGAGGAAAGCTGCCCTTGAGAAAGCAACTGCTCGTCGAATAGCTAAAGAATCTATGGAGCTTATTGAGGATGAACAGCTGGAATTGATGGAGTTGGCTGCAGCCAGCAAGGGGCTTTCTTCTATTATCCATATTGATCTTGATACTTTGCAAAACCTTGAATCATTTAGGGATTCATTGTGTGTGTTTCCACCTGAGAGTGTAAAGTTGAGAAAGCCATTTGCTATCCAACCCTGGATCAACTCAGAACAGAATGTTGGCAACCTCCTCATGGTTTGGAGATTCTTGATTACTTTTGCTGATGTTCTTGAGTTATGGCCTTTTACTCTTGATGAGTTTGTACAGGCATTTCATGACTATGATTCTAGATTGTTGGGTGAGATACATGTTGCACTTCTTAAGGTGATAATAAAAGACATTGAAGATGTTGCCAGGACACCTTCTACAGGATTAGGGACAAACCAGAATGGAGCTGCTAATCCTGGAGGGGGCCATCCAGAAATTGTGGAAGGAGCATATGCATGGGGCTTTGATATACGAAACTGGCAGAAAAACTTAAATCAATTGACATGGCCAGAAATTTTCCGACAATTAGCACTCTCTGCAGGATTAGGACCGCAGCTGAAGAAAAGAAGTATTGCATGGTCATATGCAATGGATAAAGACGAGGGAACAAGTTGTGAAGATATCATTTCTACACTCCGTAATGGTTCAGCAGCTGAAAATGCAGTGGCCAAAATGCAAGAGAGAGGTTTGTTAGCTCCTCGAAGATCAAGGCACCGGTTAACTCCAGGGACAGTTAAATTTGCAGCTTTTCATGTTCTCTCGCTGGAGGGTAGCAAGGGTTTGACCGTGTTAGAGCTTGCAGAAAAAATTCAGAAATCTGGTCTTCGGGACTTGACGACCAGCAAGACACCGGAAGCATCAATTTCTGTTGCTTTGACTAGAGACACTAAACTTTTTGAAAGAATTGCTCCATCAACATATCGTGTACGAGCTGCATTCCGAAAGGATCCTGCTGATGCTGAGTCCATTCTTTCAGAAGCAAGAAAGAAAATTCAGATATTTGAAAATGGGTTTCTAGCTGGTGAAGATGCTGATGATGTTGAAAGAGAAGAAGAGTCAGAAAGTGATGAAGTTGATGAAGATCCCGAAGATGATGATTTAGTAAACCCTTCAGATGCAAATCAAAATTCTGAACAGTATGATGACCCAAACATTTGCTCATCAAATGGAAAAGAAAATTTGGGTCATGATGTAGACCTTATTCAAAATGAGTTTGATACAGATCTACCATGCTTTCCTGAGAATGGTTCCAAGGATGCTGATTGTCCCAGTTCTGTCACTGGACAACCTGTTGCCTGTGAAGATTTAAATACTGGAAATCTTGACCAAGATAATATGGAAATTGATGAAAGTAAGTCTGGGGAGTCGTGGGTACTTGGGCTTGCTGAAGGAGAATATTCTGATCTCAGCGTAGAGGAGCGTCTAAATGCTCTTGTTGCATTGGTTGGTGTGGCAAATGAAGGAAATTCCATCCGTGTTATTCTTGAGGATCGATTGGAAGCGGCAAATGCTCTGAAGAAGCAAATGTGGGCAGAAGCACAGATAGATAAAGTTCGTCTGAAAGATGATAATATTAGTAAATTAGATTTTCCATCACTTATTGGGAATAAAATTGAAACACAATTCACATATGCAGCTGGGGAGGGCAACCAAAGCCCATTGCTTGACATTAATATTAATAATGAAGCATCACCCAGCACTGCAGAAAACCAAAAAGGAGCTCCTGTTGCACAGAGCATGCCTATTGAGAAGTCCTCATCAATTCAAGAGTTTGGCTTAGTTGCAGGTCCAGACAACCCTCAGACTCAGGTACCTGCACAATATTCAAAAAGATCACGTTCACAGTTGAAATCTTATATTGCCCACATAGCAGAGGAGATGTATGTCTACAGGTCTTTACCCCTTGGCCAAGATCGCAGACGTAATCGATATTGGCAGTTTGTTGCATCTGCTTCTAGCAATGATCCTGGTTCTGGCAGGATCTTTGTTGAATATCATGATGGCAATTGGAGGCTTATTGATTCTGAAGAGGCCTTTGATGCTCTTTTGACATCACTGGATTCACGCGGGATCAGGGAATCTCATTTGCGCTTGATGCTGCAAAAGATTGAGAATTCTTTCAAAGAAAATGTTCGAAAAAAGAGTGCACAATGTGTGAAAACTGCAAGCAGAGGTGAAGTTTCTATTAAAAATGAACCTAATGAAGCATATTCCATTGCTGACCGACATGATGGACCTGACAGTCCTAGCAGTACCCTTCATGGCTTGAACCCCGACACATCTGAAACTTCATCATCCTTCAAAATTGAGCTTGGGAAAAGTGAGAGTGAAAAGAAAGCTGCCTTGAGAAGATATCAAGATTTTCAAAAGTGGTTGTGGAAAGAATGCTATAATTCATCAATTTTATGTGCTATGAAATACGGGATAAAGAGATGCAAACCTCAGGTGGAGATTTGTGATATCTGTCTCAATCCTTATTTTGTTGAAGACTCCCATTGCAATTCCTGCCACCGGACTTTCCCCTCAAATAATGGATTTAATTTTTCTAAACATGCATTTCAATGTCGAGACAAGTTATTCAAAGATATTTGTTTTTTGGAATTTTCTCTTCCTTTGCGTACAAGATTGCTTAAGGTCCTCTTGGCTTTTATAGAGGTATCTGTTCTATCTGAAGCATTTGGAGCAAGTTGGACTGATGATATTAGGAAGCTTTGGGGTGTGAAGTTAAACAAATCATCTTCTGTTGAGGAACTTTTACAGATATTGACCCTATTTGAGAAAGCACTACGGCGAGATTTTCTGTCATCAAACTTTTCTACAACAGATGAATTGTTGGGATCAAGCAGTTTGTCAGAAAGTTCTGCACAGGCTTCAACTGATCCTGAATCTGTCACTGTGCTTCCATGGGTTCCACTAACCACTGCTGCTTTGTCTCTCAGGCTTTTTGAGATAGATTCATCCATTAGCTACGTAAAGCTTGAGAGACTTGAGCCTTGTGAGGAGAAAGAAGCGAGGGAATACATAAAGCTTCCATCAAGATATACTTCCATCAAGTCTAATAGGGAGGCTGAACCAGCAGAATTTGACCATGGTGAATTCACTAAAGATAAATCTGCTCCTAAGAAAATTGTACGAAGTGGCAATAAGCGAGGGCGAGGGAGTAGTGATCAAGGACGGGGTAAAAAGCTGTCTAAAAAAATGTACAATTCCAAACGAGACACTGGCCGCAGAAATGCTAAGGTCAGTGACAATTTAAGTCACAAATTAAAACAGCAGGCACGAGGTACACAAGGACAAGGTGCTGCTGGACGAGGTCGCCGAACGGTCAGGAAACGGAGAGTGGAAAAGAGAGCTGTTGAAGATTTGTTGCTGGGCCATACGACTGCCAGTCATAGCACCAAGATTGAGAGAGAACCATTGAGAAGTTTGGATGAGGAATGGGATGGAGAAAAGGCCAGTCCCATGACTCCTGTACACATTGGGGTTGCTGATAATAGTAACAGTGCCGAAGAGGTGGAATCCGATGATGACAATGCTCAAGCGGTGGAATATGATCAAGGAAACTGGGAGGTAGGATTTAACGGTGTTCCCTCCAACAGATGGTGTGGGGATCTGGTTGGAATGAGTGATGAAGATATGGATGCTTTTCAAGATGACAATGACAATGGCATTGAAGAGAACGAAGAGGAGGATTCAGAAGCAGATGTGATGAGTGAGGGTTCAGATGGCATGGCAAATAGGGTAGTAAATGTTGGAGGGTCGGACTCGGCTGTGTCTGAAGATTCTTCTGATTAG 5253 0.435 MEAEVENDAMKREDAGDNSNDNNNNNGSNSKIVNSSEGQSKPKRQMKTPFQLETLEKAYALENYPSESMRAELSEKLGLSDRQLQMWFCHRRLKDKKDLPSKKPRKVATLPDSPADEPRLGPEPGNDYGSGSGSGSSPFTRSELRNVVPRGYYESPQTIMELRAIACVEAQLGEPLREDGPILGVEFDPLPPDAFGAPLAVTEQQKRPSLAYDSKIYERHDVRTNKAMARTFPEYPFLPNQSGIRPDVFGQLSQAHLHDPVEGPARTPFPLGNEQLPRIHATPSHSSRVRLLSQQDKQGIPYPSPPRDNDVAPQREAHTNITSTGMNSHFTDHPIGQENQYALPGGQVFHNDAILRMERKRKSDEARVAREVEAYEMRMRKELEKQDNLRRKSEERLRKEMERQDRERRKEEERLMREKQREEERSKREQRREMERREKFLLKEHLRAEKRRQKEEIRKEKEAERRKAALEKATARRIAKESMELIEDEQLELMELAAASKGLSSIIHIDLDTLQNLESFRDSLCVFPPESVKLRKPFAIQPWINSEQNVGNLLMVWRFLITFADVLELWPFTLDEFVQAFHDYDSRLLGEIHVALLKVIIKDIEDVARTPSTGLGTNQNGAANPGGGHPEIVEGAYAWGFDIRNWQKNLNQLTWPEIFRQLALSAGLGPQLKKRSIAWSYAMDKDEGTSCEDIISTLRNGSAAENAVAKMQERGLLAPRRSRHRLTPGTVKFAAFHVLSLEGSKGLTVLELAEKIQKSGLRDLTTSKTPEASISVALTRDTKLFERIAPSTYRVRAAFRKDPADAESILSEARKKIQIFENGFLAGEDADDVEREEESESDEVDEDPEDDDLVNPSDANQNSEQYDDPNICSSNGKENLGHDVDLIQNEFDTDLPCFPENGSKDADCPSSVTGQPVACEDLNTGNLDQDNMEIDESKSGESWVLGLAEGEYSDLSVEERLNALVALVGVANEGNSIRVILEDRLEAANALKKQMWAEAQIDKVRLKDDNISKLDFPSLIGNKIETQFTYAAGEGNQSPLLDININNEASPSTAENQKGAPVAQSMPIEKSSSIQEFGLVAGPDNPQTQVPAQYSKRSRSQLKSYIAHIAEEMYVYRSLPLGQDRRRNRYWQFVASASSNDPGSGRIFVEYHDGNWRLIDSEEAFDALLTSLDSRGIRESHLRLMLQKIENSFKENVRKKSAQCVKTASRGEVSIKNEPNEAYSIADRHDGPDSPSSTLHGLNPDTSETSSSFKIELGKSESEKKAALRRYQDFQKWLWKECYNSSILCAMKYGIKRCKPQVEICDICLNPYFVEDSHCNSCHRTFPSNNGFNFSKHAFQCRDKLFKDICFLEFSLPLRTRLLKVLLAFIEVSVLSEAFGASWTDDIRKLWGVKLNKSSSVEELLQILTLFEKALRRDFLSSNFSTTDELLGSSSLSESSAQASTDPESVTVLPWVPLTTAALSLRLFEIDSSISYVKLERLEPCEEKEAREYIKLPSRYTSIKSNREAEPAEFDHGEFTKDKSAPKKIVRSGNKRGRGSSDQGRGKKLSKKMYNSKRDTGRRNAKVSDNLSHKLKQQARGTQGQGAAGRGRRTVRKRRVEKRAVEDLLLGHTTASHSTKIEREPLRSLDEEWDGEKASPMTPVHIGVADNSNSAEEVESDDDNAQAVEYDQGNWEVGFNGVPSNRWCGDLVGMSDEDMDAFQDDNDNGIEENEEEDSEADVMSEGSDGMANRVVNVGGSDSAVSEDSSD* 1751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1457 1750 ProSiteProfiles 'Homeobox' domain profile. 38 98 IPR001356 GO:0003677
Apr1g1457 1750 MobiDBLite consensus disorder prediction 98 142 - -
Apr1g1457 1750 MobiDBLite consensus disorder prediction 1697 1723 - -
Apr1g1457 1750 Pfam Homeodomain 41 97 IPR001356 GO:0003677
Apr1g1457 1750 MobiDBLite consensus disorder prediction 1224 1254 - -
Apr1g1457 1750 Gene3D - 24 99 - -
Apr1g1457 1750 MobiDBLite consensus disorder prediction 1236 1254 - -
Apr1g1457 1750 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1117 1189 IPR028941 -
Apr1g1457 1750 MobiDBLite consensus disorder prediction 1507 1599 - -
Apr1g1457 1750 MobiDBLite consensus disorder prediction 1 18 - -
Apr1g1457 1750 SMART testlast3 547 606 IPR018501 -
Apr1g1457 1750 MobiDBLite consensus disorder prediction 19 47 - -
Apr1g1457 1750 MobiDBLite consensus disorder prediction 1 51 - -
Apr1g1457 1750 MobiDBLite consensus disorder prediction 279 300 - -
Apr1g1457 1750 SMART HOX_1 40 102 IPR001356 GO:0003677
Apr1g1457 1750 MobiDBLite consensus disorder prediction 1615 1664 - -
Apr1g1457 1750 MobiDBLite consensus disorder prediction 855 877 - -
Apr1g1457 1750 MobiDBLite consensus disorder prediction 98 112 - -
Apr1g1457 1750 PANTHER HOMEOBOX DOMAIN PROTEIN 5 1750 - -
Apr1g1457 1750 MobiDBLite consensus disorder prediction 1507 1529 - -
Apr1g1457 1750 MobiDBLite consensus disorder prediction 1617 1638 - -
Apr1g1457 1750 ProSiteProfiles HARE-type HTH domain profile. 729 798 IPR007759 GO:0006355
Apr1g1457 1750 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 5 1750 IPR044977 GO:0006357
Apr1g1457 1750 MobiDBLite consensus disorder prediction 830 854 - -
Apr1g1457 1750 Coils Coil 372 474 - -
Apr1g1457 1750 MobiDBLite consensus disorder prediction 1538 1570 - -
Apr1g1457 1750 Pfam HB1, ASXL, restriction endonuclease HTH domain 729 797 IPR007759 GO:0006355
Apr1g1457 1750 MobiDBLite consensus disorder prediction 264 313 - -
Apr1g1457 1750 ProSiteProfiles DDT domain profile. 547 606 IPR018501 -
Apr1g1457 1750 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 939 982 IPR028942 -
Apr1g1457 1750 MobiDBLite consensus disorder prediction 386 433 - -
Apr1g1457 1750 MobiDBLite consensus disorder prediction 826 879 - -
Apr1g1457 1750 MobiDBLite consensus disorder prediction 1692 1750 - -
Apr1g1457 1750 SUPERFAMILY Homeodomain-like 27 97 IPR009057 -
Apr1g1457 1750 CDD homeodomain 43 97 IPR001356 GO:0003677
Apr1g1457 1750 Pfam DDT domain 549 603 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1457 Apr-Chr1 23942260 23952760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1457 34 1680 Homeobox Transcription Factor Family AT1G28420 49.650 0.0 1339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Apr1g1457 WSD 4.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1457 - - gmx:100777465 2812.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1457 1 23942260 23952760 Apr1g1457 1 23942260 23952760 ECH
Apr3g1764 3 33478289 33490094 Apr1g1457 1 23942260 23952760 PCT