Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Apr1g1456 | ATGGGATTGGACTACTACGAGATTTTGGAGGTTGATAAGAATGCCACAGATGAAGAGTTAAAGAAAGCTTACAAAAGGCTTGCCATGAAGTGGCACCCTGATAAGAATCCAAACAATAAAAAAGAGGCTGAGACTCAATTCATACTCATAGCTGAAGCCTACGAGGTCCTAAGTGATCCCCAGAAAAGGGCAATTTTTGATAGATATGGAGAAGGTGGCCTTAAAGGTGGACCACCACCATCAAATGCAGATTTGGACCCATTCTCCTTCTTCCAAAGTAGGGGCGGTGCAACAACGTTTAGGTTTAATCCCAGAAACGCAAACAACATATTTGCAGAAGTTTTTGGGTCTTCAAGCCCATTCGGAGGAATGGGAATGGGGTATGGTGGTTGTGGCAGTGGCATAAGGGGTGGATCGTGGGTGTCAAGGTCCTTTGGTGGAATGTTTGGCAATGACGTGTTTGGGGAAGGCAGGCCCATGAATCAAGGTCCACGACGCAAGGCACCTCCCATTGAAAACACATTGCTTTGCAGCCTTGAAGAGCTCTACAAGGGGACTACCAGAAAGATGAAAATATCAAGGGAAATCACTCATGCAAGTGGGAGAACTCTACCTTTGGAGGAAATATTAAACATTGAAATCCAACCAGGCTGGAAAAAGGGAACAAAAATCACTTTCCCAGAGAAAGGAAATGTGCAGCCAAATGTTATTGCTGCAGATCTTGTGTTTATTATTGATGAGAAATGTCACAATGTATTTACAAGAGATGGTAATGATTTGGTTGTGACAAAAAAGATATTACACCAAGAAGCTGAAGATCTAACGGGCTACACCATCCAACTTACAACTCTAGATGGCAGACCTCTGACCATTGCCATCAACAACGTGATTGATTCAGATTATGAAGAAGTGATTGCTGGGGAAGGTATGCCCATTTCCAAAGATCCTTCAAAGAAGGGCAACCTTAGGATCAAATTCAACTTCGAATTTCCAGACCTAGTTGATGCCACAGCAGAAAGTCAGAATTAA | 1029 | 0.4295 | MGLDYYEILEVDKNATDEELKKAYKRLAMKWHPDKNPNNKKEAETQFILIAEAYEVLSDPQKRAIFDRYGEGGLKGGPPPSNADLDPFSFFQSRGGATTFRFNPRNANNIFAEVFGSSSPFGGMGMGYGGCGSGIRGGSWVSRSFGGMFGNDVFGEGRPMNQGPRRKAPPIENTLLCSLEELYKGTTRKMKISREITHASGRTLPLEEILNIEIQPGWKKGTKITFPEKGNVQPNVIAADLVFIIDEKCHNVFTRDGNDLVVTKKILHQEAEDLTGYTIQLTTLDGRPLTIAINNVIDSDYEEVIAGEGMPISKDPSKKGNLRIKFNFEFPDLVDATAESQN* | 343 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Apr1g1456 | 342 | SUPERFAMILY | HSP40/DnaJ peptide-binding domain | 252 | 334 | IPR008971 | GO:0006457|GO:0051082 | |
| Apr1g1456 | 342 | ProSiteProfiles | dnaJ domain profile. | 4 | 70 | IPR001623 | - | |
| Apr1g1456 | 342 | SUPERFAMILY | Chaperone J-domain | 4 | 96 | IPR036869 | - | |
| Apr1g1456 | 342 | PANTHER | DNAJ HOMOLOG SUBFAMILY B MEMBER 13-LIKE | 1 | 333 | - | - | |
| Apr1g1456 | 342 | Gene3D | - | 250 | 332 | - | - | |
| Apr1g1456 | 342 | PANTHER | DNAJ HOMOLOG SUBFAMILY C MEMBER | 1 | 333 | - | - | |
| Apr1g1456 | 342 | CDD | DnaJ | 4 | 59 | IPR001623 | - | |
| Apr1g1456 | 342 | Gene3D | DnaJ domain | 3 | 125 | IPR036869 | - | |
| Apr1g1456 | 342 | SMART | dnaj_3 | 3 | 62 | IPR001623 | - | |
| Apr1g1456 | 342 | CDD | DnaJ_C | 169 | 332 | - | - | |
| Apr1g1456 | 342 | SUPERFAMILY | HSP40/DnaJ peptide-binding domain | 165 | 261 | IPR008971 | GO:0006457|GO:0051082 | |
| Apr1g1456 | 342 | ProSitePatterns | Nt-dnaJ domain signature. | 47 | 66 | IPR018253 | - | |
| Apr1g1456 | 342 | PRINTS | DnaJ domain signature | 6 | 24 | IPR001623 | - | |
| Apr1g1456 | 342 | PRINTS | DnaJ domain signature | 24 | 39 | IPR001623 | - | |
| Apr1g1456 | 342 | PRINTS | DnaJ domain signature | 42 | 62 | IPR001623 | - | |
| Apr1g1456 | 342 | PRINTS | DnaJ domain signature | 62 | 81 | IPR001623 | - | |
| Apr1g1456 | 342 | Pfam | DnaJ domain | 4 | 67 | IPR001623 | - | |
| Apr1g1456 | 342 | Gene3D | - | 170 | 249 | - | - | |
| Apr1g1456 | 342 | Pfam | DnaJ C terminal domain | 172 | 331 | IPR002939 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Apr1g1456 | Apr-Chr1 | 23937866 | 23940616 | Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Apr1g1456 | 5 | 69 | C2H2 Transcription Factor Family | AT1G74250 | 40.580 | 5.09e-10 | 58.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Apr1g1456 | K09510 | - | gmx:100794650 | 501.516 |