Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1454 ATGGGGGTGGACTATTACAAGATTTTGCAGGTTGACAAGAATGCCACGGATGAAGAGTTGAAGAAAGCTTACAGAAAACTTGCCATGAAATGGCACCCCGATAAGAACCCAACCAATAAGAAAGAGGCTGAGACTAAGTTCAAACAGATATCTGAAGCCTATGAGGTTCTAAATGATCCTCAGAAGAGAGCAATTTATGATCAATATGGAGAAGAAGGGCTTAAAGGGCAAGTGCCACCTCCGGATGCTGGTGGAGCTACGTTCTTCCAAAGTGGAGATGGCCCAACTACGTTCAGGTTCAATCCAAGAAATGCAAACGACATTTTTGCAGAGTTTTTTGGGTATTCAAGCCCATTTGGAGGAATGGGAGGTGGTGGTGGTGGCGGCGGCATGAGAGGTGGGTCCTTTGGTGGAATCTTTGGTGATGATATATTTAGTTCATTTGGAGAAGGGAGGCCCATGAATCAGGGTCCACGCAAGGCACCTCCCATTGAAAAGACATTACCTTGCACCCTTGAGGAGATCTATAAGGGTACTACCAAAAAGATGAAGATCTCTAGGGAAATTGCTGATGCAAGTGGGAAAACTTTGCCGGTGGAAGAAATACTAACCATTGAAATTAAACCGGGGTGGAAAAAGGGGACAAAGATCACATTCCCAGAGAAAGGAAATGAGCAGCCAAATGTCATTGCTGCGGATCTTGTATTTGTTATTGATGAGAAACCCCACAGCGTGTTTACAAGAGAGGGTAATGATTTGGTTGTGACGCAAAGGGTATCACTTGCTGAAGCTCTAACAGGCTACACTGTCCATCTTACAACACTAGATGGCAGGGTTCTGAACATTCCCATAACCAATGTCATTCATCTAAGCTATGAAGAGGTTGTTCCCAGAGAAGGTATGCCAATTCCAAAAGATCCTTCAAAGAGGGGTAACCTTAGGATCAAATTCAACATCAAATTCCCGGCAAGGTTGACGTCAGAGCAGAAAGTGGGAATCAAGAAACTTCTGGCGCCATAA 1020 0.4441 MGVDYYKILQVDKNATDEELKKAYRKLAMKWHPDKNPTNKKEAETKFKQISEAYEVLNDPQKRAIYDQYGEEGLKGQVPPPDAGGATFFQSGDGPTTFRFNPRNANDIFAEFFGYSSPFGGMGGGGGGGGMRGGSFGGIFGDDIFSSFGEGRPMNQGPRKAPPIEKTLPCTLEEIYKGTTKKMKISREIADASGKTLPVEEILTIEIKPGWKKGTKITFPEKGNEQPNVIAADLVFVIDEKPHSVFTREGNDLVVTQRVSLAEALTGYTVHLTTLDGRVLNIPITNVIHLSYEEVVPREGMPIPKDPSKRGNLRIKFNIKFPARLTSEQKVGIKKLLAP* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1454 339 Gene3D DnaJ domain 3 126 IPR036869 -
Apr1g1454 339 CDD DnaJ_C 162 325 - -
Apr1g1454 339 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Apr1g1454 339 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 338 - -
Apr1g1454 339 CDD DnaJ 4 59 IPR001623 -
Apr1g1454 339 SUPERFAMILY Chaperone J-domain 3 129 IPR036869 -
Apr1g1454 339 SUPERFAMILY HSP40/DnaJ peptide-binding domain 245 330 IPR008971 GO:0006457|GO:0051082
Apr1g1454 339 Gene3D - 163 241 - -
Apr1g1454 339 PRINTS DnaJ domain signature 6 24 IPR001623 -
Apr1g1454 339 PRINTS DnaJ domain signature 24 39 IPR001623 -
Apr1g1454 339 PRINTS DnaJ domain signature 42 62 IPR001623 -
Apr1g1454 339 PRINTS DnaJ domain signature 62 81 IPR001623 -
Apr1g1454 339 SMART dnaj_3 3 62 IPR001623 -
Apr1g1454 339 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Apr1g1454 339 SUPERFAMILY HSP40/DnaJ peptide-binding domain 158 252 IPR008971 GO:0006457|GO:0051082
Apr1g1454 339 Pfam DnaJ C terminal domain 164 322 IPR002939 -
Apr1g1454 339 Gene3D - 243 322 - -
Apr1g1454 339 Pfam DnaJ domain 4 67 IPR001623 -
Apr1g1454 339 PANTHER DNAJ HOMOLOG SUBFAMILY B MEMBER 13-LIKE 1 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1454 Apr-Chr1 23928307 23929698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1454 5 69 C2H2 Transcription Factor Family AT1G74250 37.681 1.22e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1454 K09510 - gmx:100775897 564.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1454 1 23928307 23929698 Apr1g1454 1 23928307 23929698 ECH