Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1444 ATGGCTTCTTCTTCTTCTTCTTCCGCCTCTCGCGAGGGACACTACAGAGGGGTAAGGAAGCGACCATGGGGACGCTACGCCGCTGAAATACGCGACCCTTGGAAGAAGACACGTGTCTGGCTCGGTACATTCGATACTCCCGAGGAGGCTGCGCTGGCCTACGACGGCGCCGCTCGTTCTCTCCGCGGAGCAAAGGCCAAAACCAACTTCCCTCCGGCGCCCACTCTCTGCCTCGACCTCAACGCTCCCTCCTCCGATCATCCTTGGTCATCGCTCCCCTCACGCGGTCTCGTCCTCACCGAGTTTCTTCACACCGGCGTTCTCAAAGATATCACCGCCGTCGATCCACCTCATCCTCCGCCGCCCGCGCCGGCTACTTACAGCCGTAGTGTTGGTGTCGGAGCCGGGCCTCAGGTGACGGAGAGTTCCCCGACGGCGTCGCTTTTGGGTCTGGTTCGGCGCGGGATCCCCATCGACTTGAACGAGCCTCCACCGTTGTGGCTATGA 507 0.6174 MASSSSSSASREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNFPPAPTLCLDLNAPSSDHPWSSLPSRGLVLTEFLHTGVLKDITAVDPPHPPPPAPATYSRSVGVGAGPQVTESSPTASLLGLVRRGIPIDLNEPPPLWL* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1444 168 MobiDBLite consensus disorder prediction 113 143 - -
Apr1g1444 168 PRINTS Ethylene responsive element binding protein signature 15 26 IPR001471 GO:0003700|GO:0006355
Apr1g1444 168 PRINTS Ethylene responsive element binding protein signature 37 53 IPR001471 GO:0003700|GO:0006355
Apr1g1444 168 Pfam AP2 domain 14 63 IPR001471 GO:0003700|GO:0006355
Apr1g1444 168 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 9 158 - -
Apr1g1444 168 SMART rav1_2 14 77 IPR001471 GO:0003700|GO:0006355
Apr1g1444 168 ProSiteProfiles AP2/ERF domain profile. 14 71 IPR001471 GO:0003700|GO:0006355
Apr1g1444 168 Gene3D AP2/ERF domain 14 72 IPR036955 GO:0003700|GO:0006355
Apr1g1444 168 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 12-LIKE 9 158 - -
Apr1g1444 168 CDD AP2 14 73 IPR001471 GO:0003700|GO:0006355
Apr1g1444 168 SUPERFAMILY DNA-binding domain 14 71 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1444 Apr-Chr1 23786050 23786704 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1444 5 168 AP2-EREBP Transcription Factor Family AT1G28360 49.749 6.56e-48 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr1g1444 AP2 2.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1444 - - gmx:100798369 259.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1444 1 23786050 23786704 Apr1g1444 1 23786050 23786704 ECH