Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1442 ATGGAATTTGAGGGGCAAGAGAAAAACTTGGGGCCAGTTTCTTTTGTGGCAAATTGCCCTGAAGTAATGCCACCATCTAATATGCATTACATAGAAGGGAATGACGTCATGCTCAAAGGTTCTGTTCCTTCTTGTGAGACACCAACATTGGAAAAGGATGAGTATTACCAGAAATACGAAATTTCAAGTCATCCAAAATCAAGAGAGAACCTGACTTCTGTTGAAGAAGGCAAAAGTCAAGGATTGGATGTTGATATTGAAAATGCTGGATCCCTTCTACAGAGGAAAACCATTGGACAATATGGTGAACCAAGTTGCAATAGCAAAGCTAATTTATCTGGTGATAATGATAGTGATTCTATAGCCACCAAGACATCTAATGATACTGGAAAAGATATGGTCATTGACTGCGTACCAAGAGATTGCCTTGTTGAGGATGTTGATAGTGGTAGGAGTTCTAAGAACAAAACCATGCAGTCGGAGATGGAGTTAAGGGATGATGTGAAACAAATGACATCAAGGAGGACCAGAAGTCTGTCTCCCAGTGCCAAGACCAAAGACGGAAACAAACGTGCTAAAATTATATGTGATTTTTTTGCTAAAGGATGGTGTATCAGAGGTAGTTCTTGTAGCTTTCTTCATATAGAAGATACTGTGAATAATTCTGACCAGGAGGCTGAAGAAGACTTAGTTACGACACATCAGAAGCGAGAACTGAAAGTGGAAGAAGGTGTTAGGGAAAATGTTGAGAGATCAAGAATGAATGAGCAAGAAGCAAGCCCTAGTTGTTATCCATCTCAAGAAAAACAGAACTTTCTGCTGAGGGACAACTTGTTTCCAGAAAATAGATTTGCATTTAGTGCATCAAACAATTATTTCAGCCCAAATCTTTCTTCAAATCCAGCCCATGCAGATGGAATGAATACTATTGGGAACCAACATATGTACAAAGGATATACTTCCTCAATTTTGAGTCATTCATCAAACTCAAGCTTGGTTACTCAATTTCCAGCTATAAGCATGCCGCTCTCTCATCGAATTTCAGCCCAATCAGGATGTTCATTGCCTTTTAGTTCATCTTTTACTTTGGATTCTCAAAAGCTTTTGAACAAGGACAAAGAATATCTTACCACTAAGTCCACTTTCTCTGGTTCAGGGCGGGAGGATTTGTCTCTAGTTAGTTCATCTAGGGTTGCTCCATATTCTAGTGGATATAAATCAAAAATCTGTTCTTATGATTGGGACCCTTCTGTTCCATTTCGACCATCCTTTTTTATTACTTCTATGAATGTATCAACCCCTGGAGATCTTTATGACCCTCTTCGTGATAGCATTGAGATACCTAATATAGGAGATGGGTCTTTGAAGGCTTCCCTTTTGGTTCATGGATCAACTGTACAGGCTTCATCACAGGTTCAAACATGTGGTGATTCCGCTGTTGTTGGGAAACACATGTCCGATCTTAATGATGACAAAAGTTCTGTATCTTCTCATAATAGATTTTGTGAAAATGGGCCAAACAAAAATTGTGTTCCTCATGAAAATGATTGTCATGTACCTGAAACAGAGATAACATCGGGAAGTTACTTAAACTATCATCCAAATGGTAAAATGAGCATGGGACAACATACCTTTGATGTCGAAGATAGTACAAAAAAAGACATAGAAACAACTGAGCGTGATGCTAGACATCATGGTGAAGGATCAGGGCACAAAAAGAAGAGAGTAGATAGGGACAAGAAAAATCATGAAATGGATGTTGACTTTCAAATGGATGACAGCATGCAGAAGGAATCAAAGGCACTAAGAAATTTCCGAGCAACTCTGGTTGATCTTGTGAAGGAGTTGTTAAAGCCAGCTTGGCATGAGGGTCGTCTCAGCAAGGATGCACATATTATGATAGTAAAAAAATCAGTTGACAAAGTTGTTAGCACCTTAGAGCCCCACCAGATTCCAACCAGCATAGATACTGCTAAGCAGTATGTTTCTTCATGTCGGGTGAAAATTACAAAACTGGTCAATGGATATGTGAATAAATATTGCAAATCTTGA 2052 0.3894 MEFEGQEKNLGPVSFVANCPEVMPPSNMHYIEGNDVMLKGSVPSCETPTLEKDEYYQKYEISSHPKSRENLTSVEEGKSQGLDVDIENAGSLLQRKTIGQYGEPSCNSKANLSGDNDSDSIATKTSNDTGKDMVIDCVPRDCLVEDVDSGRSSKNKTMQSEMELRDDVKQMTSRRTRSLSPSAKTKDGNKRAKIICDFFAKGWCIRGSSCSFLHIEDTVNNSDQEAEEDLVTTHQKRELKVEEGVRENVERSRMNEQEASPSCYPSQEKQNFLLRDNLFPENRFAFSASNNYFSPNLSSNPAHADGMNTIGNQHMYKGYTSSILSHSSNSSLVTQFPAISMPLSHRISAQSGCSLPFSSSFTLDSQKLLNKDKEYLTTKSTFSGSGREDLSLVSSSRVAPYSSGYKSKICSYDWDPSVPFRPSFFITSMNVSTPGDLYDPLRDSIEIPNIGDGSLKASLLVHGSTVQASSQVQTCGDSAVVGKHMSDLNDDKSSVSSHNRFCENGPNKNCVPHENDCHVPETEITSGSYLNYHPNGKMSMGQHTFDVEDSTKKDIETTERDARHHGEGSGHKKKRVDRDKKNHEMDVDFQMDDSMQKESKALRNFRATLVDLVKELLKPAWHEGRLSKDAHIMIVKKSVDKVVSTLEPHQIPTSIDTAKQYVSSCRVKITKLVNGYVNKYCKS* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1442 683 MobiDBLite consensus disorder prediction 62 83 - -
Apr1g1442 683 MobiDBLite consensus disorder prediction 559 585 - -
Apr1g1442 683 MobiDBLite consensus disorder prediction 103 128 - -
Apr1g1442 683 MobiDBLite consensus disorder prediction 148 186 - -
Apr1g1442 683 ProSiteProfiles Zinc finger C3H1-type profile. 190 217 IPR000571 GO:0046872
Apr1g1442 683 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 2 683 - -
Apr1g1442 683 MobiDBLite consensus disorder prediction 148 173 - -
Apr1g1442 683 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 2 683 - -
Apr1g1442 683 SUPERFAMILY CCCH zinc finger 190 214 IPR036855 GO:0046872
Apr1g1442 683 Gene3D - 181 271 - -
Apr1g1442 683 Pfam Torus domain 166 217 IPR032297 -
Apr1g1442 683 MobiDBLite consensus disorder prediction 244 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1442 Apr-Chr1 23757039 23760447 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Apr1g1442 Torus 5e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1442 - - aprc:113872594 1383.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1442 1 23757039 23760447 Apr1g1442 1 23757039 23760447 ECH