Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1438 ATGGATGAAAGCTGGAGTGTGGGAAAGAGGAGCATGAAGTACAAGGAAGAAGATGAGTATGAAGAAGAGGAAGAGGAAGAGGTAAGTGAGATGGGTTATGGAGAGGATGGTAGGAAGAAGAGGGTAGTGAGTGATCTCCAAAGCAAGAGAGGGTCCAAAGCTGGAGGCTCAGTGCCACCTTCTTGTCAAGTAGATGGTTGTAATGCTGATCTAAGTGATGCTAAGTCCTACCATAAGCGCCACAAGGTCTGTGAGTACCATGCCAAGGCTCCTGCCGTACTCATTGCAGAGCAGCATCAAAGGTTTTGCCAACAATGTAGCAGGTTTCATGAGCTATCAGAATTTGATGACTCAAAAAGGAGTTGTAGAAAACGTTTGGCTGGACATAATGAGAGGCGTCGCAAAAATTCCTCTGAATATCATGGACTTTGA 432 0.4537 MDESWSVGKRSMKYKEEDEYEEEEEEEVSEMGYGEDGRKKRVVSDLQSKRGSKAGGSVPPSCQVDGCNADLSDAKSYHKRHKVCEYHAKAPAVLIAEQHQRFCQQCSRFHELSEFDDSKRSCRKRLAGHNERRRKNSSEYHGL* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1438 143 Pfam SBP domain 62 135 IPR004333 GO:0003677
Apr1g1438 143 MobiDBLite consensus disorder prediction 32 47 - -
Apr1g1438 143 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 13 137 IPR044817 GO:0003677
Apr1g1438 143 MobiDBLite consensus disorder prediction 1 62 - -
Apr1g1438 143 ProSiteProfiles Zinc finger SBP-type profile. 59 136 IPR004333 GO:0003677
Apr1g1438 143 Gene3D - 52 123 IPR036893 GO:0003677|GO:0005634
Apr1g1438 143 PIRSF SBP 6 143 IPR017238 GO:0003677|GO:0003700|GO:0009908
Apr1g1438 143 MobiDBLite consensus disorder prediction 1 17 - -
Apr1g1438 143 SUPERFAMILY SBT domain 60 140 IPR036893 GO:0003677|GO:0005634
Apr1g1438 143 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 3 13 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1438 Apr-Chr1 23709663 23711589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1438 46 139 SBP-box Gene Family AT2G33810 65.957 2.00e-40 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Apr1g1438 SBP 8.5e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1438 - - gmx:100782285 229.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1438 1 23709663 23711589 Apr1g1438 1 23709663 23711589 ECH
Apr1g1438 1 23709663 23711589 Apr3g1782 3 33650360 33652550 ECH
Apr2g0412 2 4843679 4844994 Apr1g1438 1 23709663 23711589 ECH
Apr5g0124 5 1118038 1119433 Apr1g1438 1 23709663 23711589 ECH
Apr2g1904 2 24539727 24541372 Apr1g1438 1 23709663 23711589 ECH
Apr3g1782 3 33650360 33652550 Apr1g1438 1 23709663 23711589 PCT