Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1433 ATGGCCTCATCTCCCGATAACAACCTGGAGTGGGATGCTGATAAAATACTTCAATTATATTTGCATGATTATATGATCAAAAAGGGAATGCACAGCGCTGCCAAGATTTTCAAGAAGGAAGCCCATGTTCCTAACAACCCCGTCGACATGAAATTTTTAGATTCAGTGATTGATTCTCCAGATGGATTCCTACATGAATGGTGGTCTATTTTCTATGATGTATTTACCTCTAGGCAAGGGGAGGATAAGGAGACCGGGTCAGGATCCTCTAGTAAGGTCCCAGATGCAAGTAATGATGCCTCTCCTAGAATTCCTCAAATACCAATGAATGAGCCGAGATCCTCTAAACAGTTTCAAGTCAGCTCCAACTTTAACAACATGATGCCACAACCGGCTATTTGTTTAATACCTTCAATAATTTATCCATCACAAGATGTAAGCAAGCAAAACCAGAAGCAGGTCGCTAAGGAAAGTGGAATTGGTATGTGTGTAAGGAGGGATACACTTCTGGACCCTCGAGATGTAATGCAAAAGATGACGTCTCCTTTAGAGGGACCTCATGAAAAAAAGATCAATGAACGTCTCAATCTAGTACCACTAAGTGGATGGCCAATAAATGTAGGTGATGGAGTACTAACATCACTTTCGCAATCACCAAACTATCAACAACAATGTCATGTGTTGAAAACACAAAATCAGAACACATTCCTTGCTCAAGCACTTGCATGTACTCCTAAAAATCAGACCTTTGCAGTTCTTGGAAACCCTACCAATTTCAACAGTCAATATATGATGATTCCCAAGATTGAATCAAGTGATAAGGATAAACAGATGATAAACCAAATGACTAACACTGTAGAACATCAACACCAACGCGGTCAACAAATTCAAAGTCAGATCCCGAATGCTGAGAAAAATAAAAAGGGAAAGACATCAGTATCCTTGAGACCTGGAGAGAGTGCCCAGAATTATGCGGATGAAGCAGATGGAAAACCTGAGGATGAAAATGTGGAGTCTTTCCTATCTTTTGAAAATGAAAATGCTGATCATAGAACTGCACCTTTCAGCAATCTGAAACGTATTTCTACAACATGCAAAATTGAAAATAAAGGTTTTTCATTTGAAGAGGTTGGTTGCCTCCATTCAAGTAAAAGCAAGGTATTGTCTAGCCATTTTTCATCAGATGGAAAAGTGTTAGCAAGTGCTGGACATGATAAGAAGGTATTTCTTTGGAACATGGAAACTTTTGATTGTGCAACGACTACAGAAGCACATTCACTTCTTGTTACAGATGTTCGATTTAAACCAGGTTCAACCATATTTGCAACATCTTCCTTCGATAGATCTGTGAGATTATGGGATGCAGCCAAACCAACGAAATCAATGTTCAAACTTACTGGCCATGCTGAACAAGTAATGTCATTGGATTTTCACCCAAGAAAGGTGGACCTTCTTTGCTCATGTGATAGCAATGATGTAATTCGACTGTGGAATGTCAATCAATGTGTTTGCATGCATGTCACTAAGGGAGGTAGTAAACAAGTTAGATTCCAGCCTTTTTTTGGGAAGTATTTGGCTACTGCTTCTACAAATAATATCAAAGTAATTGATATTGAGACTAATAGCCTTCTGTTTAATCTAAAGGGACATGTTAAAGATGTTATATCCATTTGTTGGGATAAAGGTGGAAACTATATTGCCTCTGTCAGTGAAGATAGTGCACGTGTTTGGTCTGTTGCATCGGATGGAAAATGTATAAGTGAATTACATTCAAACGGGAACAAATTTCAATCATGCATTTTTCATCCAGGATATCTTAACCTCTTAGTTATTGGCGGTTATCAGTCCCTAGAATTATGGAGTCCAACAGAGAGCAGTAAAACATGGGCCGTTCCAGCACACAAGGGATTAATTGCTGGACTAGCAGATTCACCCAAAGAAGAATTGATTGCTTCAGCCAGTCATGATCACTGCGTAAAACTTTGGAAATGA 1992 0.3901 MASSPDNNLEWDADKILQLYLHDYMIKKGMHSAAKIFKKEAHVPNNPVDMKFLDSVIDSPDGFLHEWWSIFYDVFTSRQGEDKETGSGSSSKVPDASNDASPRIPQIPMNEPRSSKQFQVSSNFNNMMPQPAICLIPSIIYPSQDVSKQNQKQVAKESGIGMCVRRDTLLDPRDVMQKMTSPLEGPHEKKINERLNLVPLSGWPINVGDGVLTSLSQSPNYQQQCHVLKTQNQNTFLAQALACTPKNQTFAVLGNPTNFNSQYMMIPKIESSDKDKQMINQMTNTVEHQHQRGQQIQSQIPNAEKNKKGKTSVSLRPGESAQNYADEADGKPEDENVESFLSFENENADHRTAPFSNLKRISTTCKIENKGFSFEEVGCLHSSKSKVLSSHFSSDGKVLASAGHDKKVFLWNMETFDCATTTEAHSLLVTDVRFKPGSTIFATSSFDRSVRLWDAAKPTKSMFKLTGHAEQVMSLDFHPRKVDLLCSCDSNDVIRLWNVNQCVCMHVTKGGSKQVRFQPFFGKYLATASTNNIKVIDIETNSLLFNLKGHVKDVISICWDKGGNYIASVSEDSARVWSVASDGKCISELHSNGNKFQSCIFHPGYLNLLVIGGYQSLELWSPTESSKTWAVPAHKGLIAGLADSPKEELIASASHDHCVKLWK* 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1433 663 ProSiteProfiles LIS1 homology (LisH) motif profile. 13 45 IPR006594 GO:0005515
Apr1g1433 663 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 380 415 - -
Apr1g1433 663 Gene3D - 220 510 IPR015943 GO:0005515
Apr1g1433 663 MobiDBLite consensus disorder prediction 285 333 - -
Apr1g1433 663 Pfam WD domain, G-beta repeat 631 663 IPR001680 GO:0005515
Apr1g1433 663 Pfam WD domain, G-beta repeat 543 578 IPR001680 GO:0005515
Apr1g1433 663 Pfam WD domain, G-beta repeat 418 454 IPR001680 GO:0005515
Apr1g1433 663 Pfam WD domain, G-beta repeat 462 498 IPR001680 GO:0005515
Apr1g1433 663 Pfam WD domain, G-beta repeat 381 412 IPR001680 GO:0005515
Apr1g1433 663 Gene3D - 511 663 IPR015943 GO:0005515
Apr1g1433 663 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 422 454 - -
Apr1g1433 663 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 465 500 - -
Apr1g1433 663 SMART WD40_4 458 498 IPR001680 GO:0005515
Apr1g1433 663 SMART WD40_4 415 454 IPR001680 GO:0005515
Apr1g1433 663 SMART WD40_4 501 537 IPR001680 GO:0005515
Apr1g1433 663 SMART WD40_4 373 412 IPR001680 GO:0005515
Apr1g1433 663 SMART WD40_4 622 663 IPR001680 GO:0005515
Apr1g1433 663 SMART WD40_4 582 621 IPR001680 GO:0005515
Apr1g1433 663 SMART WD40_4 540 578 IPR001680 GO:0005515
Apr1g1433 663 ProSiteProfiles Trp-Asp (WD) repeats profile. 380 421 IPR001680 GO:0005515
Apr1g1433 663 ProSiteProfiles Trp-Asp (WD) repeats profile. 465 500 IPR001680 GO:0005515
Apr1g1433 663 ProSitePatterns Trp-Asp (WD) repeats signature. 485 499 IPR019775 -
Apr1g1433 663 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 11 663 IPR044716 GO:0003714
Apr1g1433 663 ProSiteProfiles Trp-Asp (WD) repeats profile. 631 663 IPR001680 GO:0005515
Apr1g1433 663 MobiDBLite consensus disorder prediction 81 116 - -
Apr1g1433 663 MobiDBLite consensus disorder prediction 81 97 - -
Apr1g1433 663 Pfam LisH 22 41 IPR006594 GO:0005515
Apr1g1433 663 ProSitePatterns Trp-Asp (WD) repeats signature. 399 413 IPR019775 -
Apr1g1433 663 SUPERFAMILY WD40 repeat-like 374 663 IPR036322 GO:0005515
Apr1g1433 663 MobiDBLite consensus disorder prediction 285 319 - -
Apr1g1433 663 CDD WD40 376 663 - -
Apr1g1433 663 SMART Lish 13 45 IPR006594 GO:0005515
Apr1g1433 663 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 631 663 - -
Apr1g1433 663 ProSiteProfiles Trp-Asp (WD) repeats profile. 422 454 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1433 Apr-Chr1 23627990 23636627 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1433 397 662 Miscellaneous Gene Families AT5G08390 24.460 3.03e-15 77.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Apr1g1433 WD40 0.018 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1433 - - gsj:114387334 964.14