Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1428 ATGGTTTTGCAAGAAGCTTCAAACCCCGATCACTTCTTTCTCACTAACTTGGCTTCTCACTTTGGCAGAAATTCACTTCCAAGATTGAGGATGCCAGAGAGGTCCACACAAAAGGAGGTAGTATACCAAAACATACACGACGAGCTTCTGCTTGATGGGAATCCAAAGTTGAATATGGCTTCCTTTGTCACCACAGCCATGGAGGAAGAGTGCAACAAGCTCATTATGGAATCTATCAACAAAAACTACATCAATATGGATGAGTATCCTGTTACCAATGAACTCCACAACCGGTGCGTGAACATGATAGCACGTCTATTCAATGTTCCAATTGGAGAAAATGAAAGTGCAGTTGGAGCAGGAACTGTTGGGTCGTCTGAGGCCATAATGTTAGCTGGGCTTGCATTCAAGAAGAAGTGGCAGAACAAACGCAAGGCTGATGGCAAACCCTATGACAGGCCCAACATCGTCACAGGCTCTAACGTACACGTATGTTGGGAAAAATTTGCAAGGTATTTTGAAGTGGAGTTGAAGGAGGTGAAGGTAAAGGAAGGGTGCTATGTGATGGAGCCTGCAAAAGCCGTTGAGATGGTGAATGAGAACACTATTTGTGTGGTGGCAATATTGGGTTCTACTTATAATGGAGAGTTCGAAGATGTCAAGCTCTTAAACGACCTTCTGCTCCAGAAAAACAAGAGAACTGGATGGGATACATGTATTCATGTTGATGCCGCAAGTGGTGGCTTTATCGCTCCTTTCATATATCCAGAGCTTGAATGGGATTTCAGACTCCCTTTGGTGCAAAGCATCAATGTTAGTGGTCATAAGTATGGTCTTGTCTATGCTGGAATTGGTTGGGTTGTTTGGAGGAGCAATAATGACTTGCCTCAAGACCTTGTTTTCCATATCAATTACCTTGGTGCTGACCAGCCCACTTTTACCCTCAATTTCTCCAAAGGTTCTAGTCAAATTATTGCTCAATATTATCAGCTGATTCGCCTGGGACAAGAGGGGTATCGAAATGTGATGGAAAATTGCAGAGAAAATGCCATTATGCTGAAGGAAGGATTGGAGAAAACTGGATGCTTTAACATACTCTCAAAGGACAACGGAGTTCCTGTGGTGGCATTTTGTCTTAGGGACAAAAGCTTACACGATGAGTTTGAGATATCAAACATGTTACGTCGCCATGGTTGGTGTGTGCCCGCTTATTCAATGCCACCCGATGCTGAGCACATCAATGTCCTTCGTGTTGTGATTAGAGCCGAGTTTTCTCGCACACTTGTTCAACACCTTCTGCTTGACATCACAAATGTTCTACGTGAGCTTCACAAACTTCCCCCAAAGTTCAATGCCCAAATGAACAACATGCATGATGAAGAGAAGGCTAAGGGTTGCAATGGGTCCAAGACCGAGAATGATCCCTTGTGTTTCTTTAAGCATACTAAAACAGTTGATGGACGACCAGAGCACTTGTTTTGGTCAAATGGTGGGAGTCGCTTTGATTATCAAGTATTTGGAGATGTTATGGCTTTTGATAGTACCTACAAGAAGAACAAGTACAACAAGCCATTGGTTATTTTTTGTAGGTACAATCACCACGGACAAACTACAATTTTTGGTTGTGCATTGGTTTCAGATGAGACAATTGAGACATACAAGTGGATTTTGGAGTCCTTTTTTGAGTTAATGTTTTGCAAACACCCTAATGCAGTTGTCATAGATGGAGATGGGGCAATACGAGAAGCTATTAAGGTTGTATTCCCAAATTGTTTGCATCAACTATATTCATGGCATATCCAACAAAATGCCATTGAGAATGTAAAGAATCCAAAATTTTTGGAAGAGTTTAACTCCTTGATTTATGCTAACTTTAGTCATGACAAGTTTGAGGTTGAGTGGATAAGGATCATGGAGAAATATGATGTTGTAAACAACAAGTGGGTGAAGAAAATGTATGACGTGAAGTATATATAG 1977 0.4158 MVLQEASNPDHFFLTNLASHFGRNSLPRLRMPERSTQKEVVYQNIHDELLLDGNPKLNMASFVTTAMEEECNKLIMESINKNYINMDEYPVTNELHNRCVNMIARLFNVPIGENESAVGAGTVGSSEAIMLAGLAFKKKWQNKRKADGKPYDRPNIVTGSNVHVCWEKFARYFEVELKEVKVKEGCYVMEPAKAVEMVNENTICVVAILGSTYNGEFEDVKLLNDLLLQKNKRTGWDTCIHVDAASGGFIAPFIYPELEWDFRLPLVQSINVSGHKYGLVYAGIGWVVWRSNNDLPQDLVFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGQEGYRNVMENCRENAIMLKEGLEKTGCFNILSKDNGVPVVAFCLRDKSLHDEFEISNMLRRHGWCVPAYSMPPDAEHINVLRVVIRAEFSRTLVQHLLLDITNVLRELHKLPPKFNAQMNNMHDEEKAKGCNGSKTENDPLCFFKHTKTVDGRPEHLFWSNGGSRFDYQVFGDVMAFDSTYKKNKYNKPLVIFCRYNHHGQTTIFGCALVSDETIETYKWILESFFELMFCKHPNAVVIDGDGAIREAIKVVFPNCLHQLYSWHIQQNAIENVKNPKFLEEFNSLIYANFSHDKFEVEWIRIMEKYDVVNNKWVKKMYDVKYI* 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1428 658 Gene3D - 360 447 - -
Apr1g1428 658 Pfam MULE transposase domain 509 603 IPR018289 -
Apr1g1428 658 Pfam Pyridoxal-dependent decarboxylase conserved domain 34 379 IPR002129 GO:0016830|GO:0019752|GO:0030170
Apr1g1428 658 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 18 443 IPR010107 GO:0004351|GO:0006536|GO:0030170
Apr1g1428 658 SUPERFAMILY PLP-dependent transferases 16 445 IPR015424 -
Apr1g1428 658 PANTHER GLUTAMATE DECARBOXYLASE 4 470 - -
Apr1g1428 658 PANTHER GLUTAMATE DECARBOXYLASE 4 470 IPR010107 GO:0004351|GO:0006536|GO:0030170
Apr1g1428 658 Gene3D - 1 64 - -
Apr1g1428 658 Gene3D - 65 359 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1428 Apr-Chr1 23541322 23552669 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1428 1 449 Calmodulin-binding Proteins AT5G17330 76.000 0.0 726
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1428 K01580 - gmx:100812201 723.391