Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1426 ATGGAGAACAACCCTAACTCATCCAGAAATATTGATAGAAAATTCATTGAGAGGAACAGAAGAAATCAAATGAAAACTCTCTACCGCAAGCTCAACTCACTTGTGCCTCATCAAAGCTCAAGGGATCCTATTTCACTGCCGGATCAGCTAGAAGAAGCCACAAATTACATAAAGAAACTACAGATGAATTTGGAGAAAATGAAGGATAAGAAGATCATGCTACTTGGAATTGAAAAGCCAAATATGAGAGTGAATGGAGGAAAGACCACTGTGGGGTTGAAATCTCCACGAATTGAGATCCAACAAATGGGTTCAGCCTTAGAAGTTGTTCTAGTAACTGGGTTGGATTCTCAGTTCATGTTCAGTGAATCCATTCGTGTTCTTTATGAAGAAGGAGTAGATGTTGTTAATGCTAGTTATAAAGTCGTTGAAGATCTAGTTTTCCATTCAATACACTGTCAGGTAAGGGAGTCTACAAGTGGAGCTGCAAGGATATCTGAGAGACTAGAGAACTTTATCTATGATTCTAGTTCTAGCTAA 540 0.3852 MENNPNSSRNIDRKFIERNRRNQMKTLYRKLNSLVPHQSSRDPISLPDQLEEATNYIKKLQMNLEKMKDKKIMLLGIEKPNMRVNGGKTTVGLKSPRIEIQQMGSALEVVLVTGLDSQFMFSESIRVLYEEGVDVVNASYKVVEDLVFHSIHCQVRESTSGAARISERLENFIYDSSSS* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1426 179 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 8 60 IPR011598 GO:0046983
Apr1g1426 179 PANTHER TRANSCRIPTION FACTOR BHLH162 4 174 - -
Apr1g1426 179 Gene3D - 2 84 IPR036638 GO:0046983
Apr1g1426 179 SMART finulus 14 66 IPR011598 GO:0046983
Apr1g1426 179 Coils Coil 50 70 - -
Apr1g1426 179 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 7 74 IPR036638 GO:0046983
Apr1g1426 179 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 4 174 IPR015660 GO:0003700|GO:0006357
Apr1g1426 179 Pfam Helix-loop-helix DNA-binding domain 15 61 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1426 Apr-Chr1 23508910 23509775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1426 3 173 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 47.514 2.66e-52 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr1g1426 HLH 2.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1426 - - gmx:100814407 284.263