Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1425 ATGGAGGAAGATACAAATTCTTGGATTAGGAGGACGAAGTTTTCTCACACAGTGTGCCATCGTTTGGATCCTTCTAGATTAGGCTCTATTCCTATCACCATTCAGTCAGAGCAAATATCAAGGCCTTCTTCAGAGGCTCAGACAAACCTCGTTAAAAATAAGCATAGATCTTTGTCTCCATTGCCTCAGACTTTTCTCTCTGAGGCCTTCAGGGAAGCTAGACATGAACAGAAGAGGTTCTCAACACCAGGTCCTAGGAGGGAAAAGAGGATTATGGGCAAGTTGTTGCACAAGGATTCTCGGGAAACTAAGGAATCAAGTTCGAGGTCATCTTCCAATAGTAGTTCAAATGGACAAATGGAGTCAAAGCACCACAAGGATGCAGCATGGACTAGGTATTTTGATAATGGTGGAGGAAAGGCTACTGCTGTGGAAACAGCTAAAGAGTGGAATGTTGACATGTCTAAGCTGTTTCTTGGCCTCAAGTTTGCACATGGAGCTCATAGTCGACTATACCACGGTGTATATAAGGATGAGGCTGTTGCTGTTAAAATCATTTGTGAACCTGATGATGACGAAACTGGAAACATGGCTTCTCGATTAGAGAAACAGTTTGTCCGGGAAGTCACCCTTTTATCTCGACTTCACCATCAAAATGTTGTTAAGTTCTTAGCAGCATGCACAATGCCACAGGTTTATTGTGTTATCACAGAGTATTTGTCGGAAGGTTCCTTGAGGGCATTTTTGCACAAGTTGCGGCCCAACGCTATTCCTCTACAAAAGTTGATACCTTTTGCTCTGGATATTGCTCGCGGAATGGAATATATACATTCTCAAGGTGTCATTCATCGAGACCTCAAACCAGAGAATGTCCTTATCAATGAAGACTTTAGCCTTAAAATTGCTGATTTTGGCATTGCATGTGAGGAGGCATCATGTGACTTATTGGCCGATGACCCTGGCACCTTCCGTTGGATGGCACCTGAGATGATCAAACGTAAAGCATATGGGAGAAAGGTTGATGTGTACAGTTTTGGGCTTATCTTATGTGAAATGTTGACTGGAAAAACTCCTTATGAGGATATGAATCCAATACAGGCTGCTTTTGCAGTAGTAAATAAGAATTCAAGGCCATTTATTCCATCAGATTGTCCACCTGCTATGCGAGCTTTAATTGAGCAATGTTGGTGCTTGCCAGCAGATAAGAGGCCTGAATTCTGGCAGATTGTCAAGGTATTAGAGCAATTTGAATTATCACTTGCCCGTGATGGAACCCTCACTCTGGTGCAATACCCTTGTGGTCAAGATCATAAGAAAGGGCTTCTTCATTGGATTCAAAAGCTTGGTCCCGTGCATCAGAATAGTGGCCCTGTGCCTAAACCCAAATTTACATGA 1395 0.428 MEEDTNSWIRRTKFSHTVCHRLDPSRLGSIPITIQSEQISRPSSEAQTNLVKNKHRSLSPLPQTFLSEAFREARHEQKRFSTPGPRREKRIMGKLLHKDSRETKESSSRSSSNSSSNGQMESKHHKDAAWTRYFDNGGGKATAVETAKEWNVDMSKLFLGLKFAHGAHSRLYHGVYKDEAVAVKIICEPDDDETGNMASRLEKQFVREVTLLSRLHHQNVVKFLAACTMPQVYCVITEYLSEGSLRAFLHKLRPNAIPLQKLIPFALDIARGMEYIHSQGVIHRDLKPENVLINEDFSLKIADFGIACEEASCDLLADDPGTFRWMAPEMIKRKAYGRKVDVYSFGLILCEMLTGKTPYEDMNPIQAAFAVVNKNSRPFIPSDCPPAMRALIEQCWCLPADKRPEFWQIVKVLEQFELSLARDGTLTLVQYPCGQDHKKGLLHWIQKLGPVHQNSGPVPKPKFT* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1425 464 SUPERFAMILY Protein kinase-like (PK-like) 144 413 IPR011009 -
Apr1g1425 464 CDD STKc_MAP3K-like 164 413 - -
Apr1g1425 464 PANTHER TYROSINE KINASE FAMILY PROTEIN 3 441 - -
Apr1g1425 464 SMART serkin_6 157 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1425 464 MobiDBLite consensus disorder prediction 72 126 - -
Apr1g1425 464 MobiDBLite consensus disorder prediction 37 58 - -
Apr1g1425 464 ProSitePatterns Serine/Threonine protein kinases active-site signature. 281 293 IPR008271 GO:0004672|GO:0006468
Apr1g1425 464 MobiDBLite consensus disorder prediction 72 106 - -
Apr1g1425 464 ProSiteProfiles Protein kinase domain profile. 157 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1425 464 PRINTS Tyrosine kinase catalytic domain signature 237 250 IPR001245 GO:0004672|GO:0006468
Apr1g1425 464 PRINTS Tyrosine kinase catalytic domain signature 275 293 IPR001245 GO:0004672|GO:0006468
Apr1g1425 464 PRINTS Tyrosine kinase catalytic domain signature 321 331 IPR001245 GO:0004672|GO:0006468
Apr1g1425 464 PRINTS Tyrosine kinase catalytic domain signature 340 362 IPR001245 GO:0004672|GO:0006468
Apr1g1425 464 PRINTS Tyrosine kinase catalytic domain signature 384 406 IPR001245 GO:0004672|GO:0006468
Apr1g1425 464 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 3 441 - -
Apr1g1425 464 Pfam Protein tyrosine and serine/threonine kinase 162 413 IPR001245 GO:0004672|GO:0006468
Apr1g1425 464 Gene3D Transferase(Phosphotransferase) domain 1 242 430 - -
Apr1g1425 464 Gene3D Phosphorylase Kinase; domain 1 145 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1425 Apr-Chr1 23488274 23492107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1425 1 464 MAP Kinase Kinase Kinase AT5G58950 55.619 0.0 568
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Apr1g1425 PK_Tyr_Ser-Thr 7.5e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1425 - - gmx:100500590 748.429
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1800 3 33855817 33860862 Apr1g1425 1 23488274 23492107 PCT