Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1413 ATGGCATTTCAGGACTACTTTTCCCAGGAGTTGAAAACCATCCCAAATGCTGTGGCTGAGACAGAAAATTCCAATGGTTGTTTTGATTGCAATATCTGCTTAGACTTTGCACATGAACCGGTAGTGACCCTATGTGGGCATCTTTACTGTTGGCCCTGCATCTACAAGTGGCTCCATGTTCAAAGTGATTCTCTAGGACCTGATGAACACCCTCAATGCCCTGTTTGCAAGGCTAACATATCCCATAGCACAATGGTTCCACTATATGGCCGTGGCCAGGCCACAGCTGAAGGGAAAACATCCTGTTGTGATATCTTTGTTCCACCAAGACCACCTGCATCAAGTGCTCAAGCTCTATTGGCAACATCATCTCAAGATGGTCAACAACTTCAATATCGAAATCCTTATCAGGGTCAATATTTCAGCTCATACCAAGATGAGAATGCCACTTCACAAATGCTCAATCTTGGTGCCACCGTGAGTCCAGGATCCCACCACCACCCTGTGGCTGGGATGTTTGGAGAGATGGTTTATGCTCGCGTGTTTGGCAACCCAGAAAATTTGTATGCATACCCGAATTCTTATCAGCTGATGGGAGGTAATAGCCCGAGATTGAGAAGGCAAGAGATGCAGGCAGACAAATGTTTGAACAGAATTTCTTTTTTTCTCTTTTGCTGCTTTCTTCTTTGTCTTATTGTCTTCTAA 705 0.4454 MAFQDYFSQELKTIPNAVAETENSNGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSDSLGPDEHPQCPVCKANISHSTMVPLYGRGQATAEGKTSCCDIFVPPRPPASSAQALLATSSQDGQQLQYRNPYQGQYFSSYQDENATSQMLNLGATVSPGSHHHPVAGMFGEMVYARVFGNPENLYAYPNSYQLMGGNSPRLRRQEMQADKCLNRISFFLFCCFLLCLIVF* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1413 234 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3 2 234 - -
Apr1g1413 234 SMART ring_2 30 76 IPR001841 -
Apr1g1413 234 Pfam Zinc finger, C3HC4 type (RING finger) 30 76 IPR018957 GO:0046872
Apr1g1413 234 SUPERFAMILY RING/U-box 26 89 - -
Apr1g1413 234 CDD RING-HC_AtRMA_like 28 78 - -
Apr1g1413 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 91 IPR013083 -
Apr1g1413 234 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 234 IPR045103 GO:0005783|GO:0006511|GO:0061630
Apr1g1413 234 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Apr1g1413 234 ProSiteProfiles Zinc finger RING-type profile. 30 77 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1413 Apr-Chr1 23351337 23353712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1413 10 220 C3H Transcription Factor Family AT4G27470 41.475 7.66e-49 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1413 K10666 - gmx:100816864 367.466