Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1403 ATGGCAAAAGTGTCTTTCAAGGACTCCTTGAAACTGCTTGAAGCAGATATTCACCACGCTAATACCCTGGCGTCCGATTTTCCAATGGAATATGATGGAGCGTGCCTTCAGATGAGAATGTCATACAGTCCAGCAGCGCACCTCTTTCTCTTTTTGGTGCAATGGACAGATTGCAATCTTGCAGGAGCTCTTGGACTGTTAAGAATCCTAATTTACAAGGTGTATGTGGATGGGACAACTACCATGTCAACTCATGAAAGAAAAGCAAGTATTAGGGAATTCTATGGTATATCTGATAAAAAACAGAAGGCTGTATGCATGGAGAGGTATTGTAAAAGAGATGATGAGGAACACGGACAATTTTCAGACATAGACATTGAAAGAGAAGAAGAATGTGGAATATGCATGGAAATGAATAGTAAGATTGTGTTGCCTGACTGCAACCATGTCATGTGCCTGAAATGTTACCATGAATGGAGGACAAGATCACAGTCATGCCCCTTTTGCCGCGACAGTCTTAAGAGAGTGAACTCAGGTGATCTGTGGGTATTCACTGATAGTAGGGACGTAGTAGACATGGGGACAGTGACAAGGGAGAATCTTAGAAGGCTTTTCATGTACATAGATAAGTTGCCTTTGATCATTCCAGACTCCCTTTTTGACACATATGACTCTCACCTAAGATAA 687 0.4178 MAKVSFKDSLKLLEADIHHANTLASDFPMEYDGACLQMRMSYSPAAHLFLFLVQWTDCNLAGALGLLRILIYKVYVDGTTTMSTHERKASIREFYGISDKKQKAVCMERYCKRDDEEHGQFSDIDIEREEECGICMEMNSKIVLPDCNHVMCLKCYHEWRTRSQSCPFCRDSLKRVNSGDLWVFTDSRDVVDMGTVTRENLRRLFMYIDKLPLIIPDSLFDTYDSHLR* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1403 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 179 IPR013083 -
Apr1g1403 228 Pfam Zinc finger, C3HC4 type (RING finger) 129 175 - -
Apr1g1403 228 SMART ring_2 132 169 IPR001841 -
Apr1g1403 228 ProSiteProfiles Zinc finger RING-type profile. 132 170 IPR001841 -
Apr1g1403 228 PANTHER RING FINGER PROTEIN 41, 151 3 228 - -
Apr1g1403 228 PANTHER PEROXISOME BIOGENESIS FACTOR 10-LIKE 3 228 - -
Apr1g1403 228 ProSitePatterns Zinc finger RING-type signature. 147 156 IPR017907 -
Apr1g1403 228 SUPERFAMILY RING/U-box 126 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1403 Apr-Chr1 23245388 23255176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1403 124 173 C3H Transcription Factor Family AT5G41350 42.593 7.49e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1403 K25840 - gmx:100789769 424.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1814 3 34005308 34009103 Apr1g1403 1 23245388 23255176 PCT