Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1398 ATGACTTGTGGTTGCTTTGGAAGTCATCATTGCTTTGGATCCAAATCTATAAAGAAGAAAAGACGCCCTTCTTATTTTACTCCGGAAATTGGTGGCCATCCACTAGATAATGTCAGGAATTTTTCTGATGAAGAACTGAGATTGGCAACTAGTAATTATCATGCAAACAATAAGATAGGACGAGGAGGTTTTGGAACCGTTTACCAGGGAACCTTAAAAGACGGAAGACGTATAGCAGTGAAGACTCTTTCAGTTGGGTCAAAGCAAGGAGTTCGTGAATTTTTGACTGAAATTAAAACTTTGTCAAATGTTAAGCATCCAAACCTTGTTGAATTGATTGGATTCTGCATTCAAGGACCTAGTCGTACATTAGTCTACGAGTATGTGGAAAATGGAAGCCTTGATAGTGCAATACTTGGCACAAGGAGTACAAACATGAAACTAGACTGGAGAGAAAGATCTGCTATTTGTGTAGGTACTGCAAAGGGTCTTGCATTTCTTCATGAAGAACTTGCGCCACATATTGTGCACAGAGACATCAAAGCTAGTAATGTACTACTTGACAGAGACTTCAATCCCAAAATAGGTGATTTTGGGTTGGCTAAATTATTTCCAAATGGTATTACTCACATTAGCACAAGAATCGCTGGAACAACTGGTTACTTAGCACCAGAATATGCAATAGGTGGCCAGTTAACGAAGAAGGCTGATATATACAGCTTTGGTGTTCTTATACTTGAAATAATTAGTGGCCAAAGCAGCGCGAGGACTAACATGGGAGGGTCGCACAAATTTCTCTTGGAATGGGCCTGGCAGCTTCATAAAGAGGGGAAATTGTTGGAGCTTGTAGATCCTGACATGAAAGAATTTGCTGAAAAAGAGGTAATAAGGTTCATGAAGGTTGCTCTTTTTTGTACACAATCAGCAGCAAGTAGAAGACCATTGATGACAAAAGTAGTTGATATGCTAACCAAGGAAATTCAGCTCAATGAGAAAGAAATTACAGCTCCAGGATTCTTCATAGATGCAGGAGAATCCTCTAGAAAGAAGTCATACCCTGACAACTATTCTATTAGCTCTAGGGCTGTTAGTATTACCCAGGTGACCCCACGATGA 1116 0.3987 MTCGCFGSHHCFGSKSIKKKRRPSYFTPEIGGHPLDNVRNFSDEELRLATSNYHANNKIGRGGFGTVYQGTLKDGRRIAVKTLSVGSKQGVREFLTEIKTLSNVKHPNLVELIGFCIQGPSRTLVYEYVENGSLDSAILGTRSTNMKLDWRERSAICVGTAKGLAFLHEELAPHIVHRDIKASNVLLDRDFNPKIGDFGLAKLFPNGITHISTRIAGTTGYLAPEYAIGGQLTKKADIYSFGVLILEIISGQSSARTNMGGSHKFLLEWAWQLHKEGKLLELVDPDMKEFAEKEVIRFMKVALFCTQSAASRRPLMTKVVDMLTKEIQLNEKEITAPGFFIDAGESSRKKSYPDNYSISSRAVSITQVTPR* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1398 371 ProSitePatterns Protein kinases ATP-binding region signature. 59 81 IPR017441 GO:0005524
Apr1g1398 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672|GO:0006468
Apr1g1398 371 Gene3D Phosphorylase Kinase; domain 1 29 128 - -
Apr1g1398 371 SMART serkin_6 53 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1398 371 SUPERFAMILY Protein kinase-like (PK-like) 34 323 IPR011009 -
Apr1g1398 371 Gene3D Transferase(Phosphotransferase) domain 1 129 338 - -
Apr1g1398 371 ProSiteProfiles Protein kinase domain profile. 53 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1398 371 CDD STKc_IRAK 59 325 - -
Apr1g1398 371 Pfam Protein kinase domain 53 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1398 371 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 368 - -
Apr1g1398 371 PANTHER - 1 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1398 Apr-Chr1 23131275 23134473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1398 17 370 Receptor kinase-like Gene Family AT1G56120 46.045 5.95e-108 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Apr1g1398 Pkinase 1.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1398 - - gmx:100809588 588.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1818 3 34070802 34076408 Apr1g1398 1 23131275 23134473 PCT