Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1383 ATGATGTATAACATGGATTCACCTTCAGGATCTCACTCTCAGCACCCACAGCTGCCTCCTGGGTTTCGTTTCCACCCCACAGATGAAGAACTAGTGGTTCACTATCTCAAGAGAAAAGCAGATTCTGCTCCTCTTCCCGTTGCCATCATCGCTGATGTTGATCTCTACAAGTTCGACCCATGGGAGCTCCCAAGTAAGGCAGCGTTTGGTGAGCAAGAGTGGTATTTTTTCAGTCCGAGGGATAGGAAATACCCAAATGGGGCGAGGCCAAACAGGGCTGCTACATCTGGGTATTGGAAAGCTACCGGAACTGACAAGCCTATACTTGCATCTCATGGACACCACAAGGTTGGAGTCAAGAAAGCACTTGTTTTCTATGGTGGGAAGCCTCCGAAAGGGGTTAAAACCAATTGGATCATGCACGAGTATAGGCTTGTTGATAATTCCTCAAATTCTACCTCAAAACCACCACCTCTGGCTCCTCATCATGCGCACAGTAACAAAAAGAGTTCATTAAGGCTTGACGATTGGGTTTTGTGCCGAATATACAAGAAAAGCAACAGTACCATCAGCGTGCCGAGAGTACCCATGGTGGATCAAGACAGGGAGGTTTCTACGGAGAGTACTATGTTACAAACTTTGTCAACTTTGTCAATGGCTAATAATAATACACATCAGAATTCCAAATCCACGTCTTCGAGAAGCGCAAGTTATGGTCCTCTAGGACTCGAAAATGATGATACTTTTTTTGATGGATTCTTAGCAGCTGATCAGAGCGTGCAAGATGGTTGTGATTCCCGCCAAGTGTCTTCAAACGCGAGGGGAAACTTCCCTGTGAAACAAGCACTTTCATCACAGTTTTGGAATGACACAGGCTCATCTTCTTCAAGTAGGCGATTCCATTGTGATCTTAGTAATGGGAGCAGCACTGCTGAGGAAAATAACTCCTTTTATTCTCTGCTGGGCCAACTTCCACACAACGCAACGTTTCACCCAAATGGGCTTCTTGGCCATGTTGGTGATGGTGTTTTGAGGCAACAAGTTCAACTTCAACTTCCAAGCATAAATTGGAAAGCTTAA 1080 0.4528 MMYNMDSPSGSHSQHPQLPPGFRFHPTDEELVVHYLKRKADSAPLPVAIIADVDLYKFDPWELPSKAAFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILASHGHHKVGVKKALVFYGGKPPKGVKTNWIMHEYRLVDNSSNSTSKPPPLAPHHAHSNKKSSLRLDDWVLCRIYKKSNSTISVPRVPMVDQDREVSTESTMLQTLSTLSMANNNTHQNSKSTSSRSASYGPLGLENDDTFFDGFLAADQSVQDGCDSRQVSSNARGNFPVKQALSSQFWNDTGSSSSSRRFHCDLSNGSSTAEENNSFYSLLGQLPHNATFHPNGLLGHVGDGVLRQQVQLQLPSINWKA* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1383 359 SUPERFAMILY NAC domain 12 185 IPR036093 GO:0003677|GO:0006355
Apr1g1383 359 ProSiteProfiles NAC domain profile. 18 185 IPR003441 GO:0003677|GO:0006355
Apr1g1383 359 PANTHER NAC TRANSCRIPTION FACTOR 56-LIKE 5 331 - -
Apr1g1383 359 Gene3D NAC domain 27 190 IPR036093 GO:0003677|GO:0006355
Apr1g1383 359 MobiDBLite consensus disorder prediction 1 16 - -
Apr1g1383 359 Pfam No apical meristem (NAM) protein 19 145 IPR003441 GO:0003677|GO:0006355
Apr1g1383 359 MobiDBLite consensus disorder prediction 1 23 - -
Apr1g1383 359 MobiDBLite consensus disorder prediction 219 238 - -
Apr1g1383 359 PANTHER NAC TRANSCRIPTION FACTOR 56 5 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1383 Apr-Chr1 22883491 22885280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1383 15 357 NAC Transcription Factor Family AT1G61110 52.149 3.62e-106 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Apr1g1383 NAM 1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1383 - - gmx:100792372 534.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1835 3 34234407 34235957 Apr1g1383 1 22883491 22885280 PCT