Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1380 ATGGATAATAACATCTACACTTTGGCTTTTATACTTTTTCTATTTTTGAAGGGTGGGGTGATGAAATTGAGCTCTGGGCATAATGGTGATCTTGTGACTGACTTGCCTGAACAGCCTCGTGTAGATTTTCAGCACTATGCTGGATACGTTACAGTCAACGAAACCAATGGACGAGCTCTCTTTTACTGGTTCTACGAGGCCATGACCAATCCTCAAGAGAAGCCATTGGTGCTGTGGCTCAATGGAGGTCCTGGCTGCTCTTCTGTGGGATATGGAGCAACACAGGAGATTGGCCCATTTTTAGTGGACACTGATGGCAAGGGACTTAAATCTAACAACTTTTCATGGAACCAAGAAGCCAACATGTTGTTCCTGGAATCTCCTGTTGGGGTTGGCTTTTCCTACTCAAATACAACCAGTGAATATGCACTCCTGGGAGATGACTTCACAGCTAATGATACTTACACTTTTCTGCACAATTGGTTCCTCAAATTTCCATCATATAGAACAAGGACATTTTACATAGCTGGGGAGAGCTATGCAGGAAAGTATATTCCAGAGCTGGCTGAACTCATCCACGATAGAAACAAGGACCCTTCCCTTCACATTGATCTCAAGGGCATTTTGCTGGGCAACCCTGAAACATCTGATGCTGAGGATTGGTTAGGTCTAGTTGATTATGCTTGGAGCCATGCAGTGGTATCTGATGAAACTTACAAAACAATCAGAAGTAGTTGTGACTTTAACAGCAGTGATCCATGGAGTAATAAAAATTGTAGCAAAGGAGTGGATGAAGTACTCAAACAGTACAATGAAATTGATATCTACAGCCTCTACACCTCTGTCTGCTTTGCCAGCACAGCGCGTTCAAATGATCAAACCATGCAAATGGTCATGAAGTACTCATCTAAAATGCTGCCTCGGATCATGGGTGGTTATGACCCATGTCTGGATGACTATGCTAAAACTTTTTATAATAGACCAGATGTTCAGAAAGCCCTCCATGCCAGTGACGGTCACAATCTGAAGAATTGGAGCATTTGCAACCAACAAATATTCAAGGGCTGGAAACAATCAAAACCTTCTGTTATCCCAATTTACAAGAAGCTTATTTCAGCAGGACTTAGGATTTGGGTTTACAGTGGAGACACCGATGGTAGAGTGCCAGTGTTGTCTACAAGATACAGCTTAAATATGCTAGGTTTGCCTATTACTAAGCGATGGAGGCCTTGGTACCATGAAAAGGAGGTTAGTGGGTGGTATCAAGAATATCAGGGACTTACGTTTGCGACATTTCGAGGAGCTGGCCATGCAGTGCCCTGTTTCAAACCAAGCAACTCACTGGCATTGTTCTCTTCCTTTCTTCTCGGAGAATCACCACCCTCCACAAAATAA 1395 0.4315 MDNNIYTLAFILFLFLKGGVMKLSSGHNGDLVTDLPEQPRVDFQHYAGYVTVNETNGRALFYWFYEAMTNPQEKPLVLWLNGGPGCSSVGYGATQEIGPFLVDTDGKGLKSNNFSWNQEANMLFLESPVGVGFSYSNTTSEYALLGDDFTANDTYTFLHNWFLKFPSYRTRTFYIAGESYAGKYIPELAELIHDRNKDPSLHIDLKGILLGNPETSDAEDWLGLVDYAWSHAVVSDETYKTIRSSCDFNSSDPWSNKNCSKGVDEVLKQYNEIDIYSLYTSVCFASTARSNDQTMQMVMKYSSKMLPRIMGGYDPCLDDYAKTFYNRPDVQKALHASDGHNLKNWSICNQQIFKGWKQSKPSVIPIYKKLISAGLRIWVYSGDTDGRVPVLSTRYSLNMLGLPITKRWRPWYHEKEVSGWYQEYQGLTFATFRGAGHAVPCFKPSNSLALFSSFLLGESPPSTK* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1380 464 PANTHER CARBOXYPEPTIDASE 23 461 - -
Apr1g1380 464 ProSitePatterns Serine carboxypeptidases, serine active site. 175 182 IPR018202 GO:0004185
Apr1g1380 464 PRINTS Carboxypeptidase C serine protease (S10) family signature 112 124 IPR001563 GO:0004185|GO:0006508
Apr1g1380 464 PRINTS Carboxypeptidase C serine protease (S10) family signature 125 135 IPR001563 GO:0004185|GO:0006508
Apr1g1380 464 PRINTS Carboxypeptidase C serine protease (S10) family signature 161 186 IPR001563 GO:0004185|GO:0006508
Apr1g1380 464 PRINTS Carboxypeptidase C serine protease (S10) family signature 427 440 IPR001563 GO:0004185|GO:0006508
Apr1g1380 464 Gene3D - 363 457 - -
Apr1g1380 464 SUPERFAMILY alpha/beta-Hydrolases 29 458 IPR029058 -
Apr1g1380 464 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 23 461 IPR001563 GO:0004185|GO:0006508
Apr1g1380 464 Pfam Serine carboxypeptidase 38 456 IPR001563 GO:0004185|GO:0006508
Apr1g1380 464 Gene3D - 316 354 - -
Apr1g1380 464 Gene3D alpha/beta hydrolase 26 285 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1380 Apr-Chr1 22841126 22847116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1380 321 458 Calmodulin-binding Proteins AT2G22960 32.374 4.77e-15 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1380 K16297 - gmx:100819700 865.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1838 3 34261268 34264881 Apr1g1380 1 22841126 22847116 PCT