Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1375 ATGGGTAGTGCGAATTTGGAGTTGCATGTGCGAATCTTTGTCACCTCCTTCGTGATTCTCACGGGGACTTTCTGTGTTGGAGATACCGACATGGTTGATGTTGCAGCAATCAATAGTCTATATGTTTCTCTGGGCTCACCACCTCTTCAAGGGTGGAAAGCCGTGGGTGGAGATCCATGTTTGGAACTGTGGCAAGGTGTGGCTTGTGTCTTCTCCAACATAACTGCCATACGACTTGGAGGCATGAATTTGAGTGGGCAGCTGGGCAGCAATTTGAATTTCCCATCCATTATAGAAATTGATCTTAGCAACAACCACATTGAAGGGTCCATTCCATTTACTTTGCCCCCTACTCTGAGGAGCTTGTCTCTCTCAGGAAACAAATTAACTGGAAGCATACCAGATGCCTTGTCCTTACTAACTCAATTATCAAACTTGGACTTGTCAAATAACAACTTGAGTGGTCAGCTGCCTTCTTCAACTGGGAGTTTATCATCTCTTACCACATTACACTTGCAAGACAATCAACTTTCTGGGACCCTTTATGTTTTGCAGGACCTGCCTCTTCAAGACCTGAATATAGAGAACAATTTATTCTCTGGGCCAATTCCTCCAAAATTATTGACTATCCCTAATTTCAGAAAAGATGGGAATCCATTTAATACTACTATTATTCCTTCACCTCCTGCTGCTGCCCCTGCACCTGTAGCTATGCCTCCACCCCCCAAAGAATCACCTTGGAAAGTGGCAAATGGTCCTTTTGCCCTGACAGCGCCAATGCCTGCAAGCACTAGGAAGTCTTTTATAGCTAAGAGGGTCATTTTGATTGCTGGTGCAGGTTTTCTAATATTTATTGCATTGGGGCTTTGTCTGTTAATGTTGTGGTGCTTTAAGCGAAGGCCGAAGAAGAGAAATACTAAGAAACTTGCTGCGGGTGTGTTTGCGGGGCCTCTGAATAAACCTACATGCAGTGACTCTGTTTATGAAGCAACTAATCAAGGGGAGAAAGGTAAATATGAAGTACCAAATAGAAAAACAAATTTGATTCCTAAAGTTCAGGATGCACAAGACATACACATGAAAGCAGTATCTGCAACAACTTCAGAATACAACGATGGTCGTGAATCAATTAACACTGGAGGGGGTTCCAAACTTCCATCCCTGCAGCCACCACCACAACACTCTCTCCCAACCATTCCTGGTGAAAAGGTCATCGTTAATCCAGCTATAACTATCAAAGTAACTGAAAGACAAGATATGACAAATTCCATCAAAGTGTATACTATTGCATCCCTTCAGCAATATACGAATAGCTTTTCCCAAGAAAACTGTATTGGGGAAGGCACACTCGGGCCTGTTTATCGAGCTGAGCTCCCTGATGGAAAGCTATTGGCAGTCAGGAAACTGGATGCTACTGCTTCCATGGGGCAGAATCATGAACAATTTCTTCAGTTGGTGTCCAGCATCTCGAAAATTCAGCACACAAATATTGCAAGGCTTGTGGGCTACTGTGCTGAGTATAGCCAACGACTACTTGTATATGAGTATTGCAGTAATGGGACCCTACATGATGCACTGCATGCAGATTATGATCACTGTATCAAACTTCCATGGAATGCACGCGTTCAAGTGGCACTTGGAGCTGCAAGAGCTTTAGAATATATGCATGAGGACTTTCAGCCACCAATTGTACACCGGAATTTTAGGTCTGCAAATGTTCTTCTGAATGACAATTTGGAAGTGTGCATTTCTGATTGTGGATTAGGGCCTTTACTATCTTCTGGCTCTACCGGTCAGTTATCAGGACGCCTCCTTACAGCTTATGGTTACAGTGCTCCAGAATTTGAGTCTGGAAGTTATACGCAGCAAAGCGATGTCTTCAGTTTTGGTGTCGTAATGCTAGAACTCCTCACTGGACGAAAATCCTTTGACAAGTCACGGCCACGCGGAGAGCAAATTTTGGTCAGATGGGCAGTTCCTCAACTACATGACATTGATGCATTGTCAAAAATGGTTGACCCCTGCTTAAATGGAGCCTATCCTATGAAGTCATTGTCACGTTTTGCTGATATTGTTTCTTCTTGTGTACAGCGTGAACCCGAATTCCGGCCAGCAATGTCTGAAATTGTTCAAGATCTCATGCGAATGATGTAA 2154 0.4355 MGSANLELHVRIFVTSFVILTGTFCVGDTDMVDVAAINSLYVSLGSPPLQGWKAVGGDPCLELWQGVACVFSNITAIRLGGMNLSGQLGSNLNFPSIIEIDLSNNHIEGSIPFTLPPTLRSLSLSGNKLTGSIPDALSLLTQLSNLDLSNNNLSGQLPSSTGSLSSLTTLHLQDNQLSGTLYVLQDLPLQDLNIENNLFSGPIPPKLLTIPNFRKDGNPFNTTIIPSPPAAAPAPVAMPPPPKESPWKVANGPFALTAPMPASTRKSFIAKRVILIAGAGFLIFIALGLCLLMLWCFKRRPKKRNTKKLAAGVFAGPLNKPTCSDSVYEATNQGEKGKYEVPNRKTNLIPKVQDAQDIHMKAVSATTSEYNDGRESINTGGGSKLPSLQPPPQHSLPTIPGEKVIVNPAITIKVTERQDMTNSIKVYTIASLQQYTNSFSQENCIGEGTLGPVYRAELPDGKLLAVRKLDATASMGQNHEQFLQLVSSISKIQHTNIARLVGYCAEYSQRLLVYEYCSNGTLHDALHADYDHCIKLPWNARVQVALGAARALEYMHEDFQPPIVHRNFRSANVLLNDNLEVCISDCGLGPLLSSGSTGQLSGRLLTAYGYSAPEFESGSYTQQSDVFSFGVVMLELLTGRKSFDKSRPRGEQILVRWAVPQLHDIDALSKMVDPCLNGAYPMKSLSRFADIVSSCVQREPEFRPAMSEIVQDLMRMM* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1375 717 SUPERFAMILY L domain-like 33 211 - -
Apr1g1375 717 PRINTS Leucine-rich repeat signature 119 132 - -
Apr1g1375 717 PRINTS Leucine-rich repeat signature 140 153 - -
Apr1g1375 717 MobiDBLite consensus disorder prediction 368 400 - -
Apr1g1375 717 PANTHER LEUCINE RICH REPEAT KINASE 2 8 146 - -
Apr1g1375 717 PANTHER LEUCINE RICH REPEAT KINASE 2 140 717 - -
Apr1g1375 717 Pfam Protein tyrosine and serine/threonine kinase 442 713 IPR001245 GO:0004672|GO:0006468
Apr1g1375 717 SUPERFAMILY Protein kinase-like (PK-like) 420 713 IPR011009 -
Apr1g1375 717 ProSiteProfiles Leucine-rich repeat profile. 118 140 IPR001611 GO:0005515
Apr1g1375 717 ProSiteProfiles Protein kinase domain profile. 439 717 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1375 717 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 3-LIKE ISOFORM X1 8 146 - -
Apr1g1375 717 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 3-LIKE ISOFORM X1 140 717 - -
Apr1g1375 717 Gene3D Ribonuclease Inhibitor 33 228 IPR032675 -
Apr1g1375 717 Gene3D Transferase(Phosphotransferase) domain 1 517 717 - -
Apr1g1375 717 MobiDBLite consensus disorder prediction 368 389 - -
Apr1g1375 717 Gene3D Phosphorylase Kinase; domain 1 404 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1375 Apr-Chr1 22750562 22756836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1375 23 717 Strubbelig Receptor Gene Family AT4G03390 52.419 0.0 662
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Apr1g1375 PK_Tyr_Ser-Thr 4.4e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1375 - - gmx:100793423 1128.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1844 3 34347766 34354435 Apr1g1375 1 22750562 22756836 PCT