Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1373 ATGGGAACGGAGGTGATGGGGAGGTGGGGCACCTGGGAGGAGCTCCTCCTCGGTGGGGCCGTTCTTCGCCACGGTACCCGAGACTGGAACGTTGTCGCCGCCGAACTCCGAGCCCGAACAGTTTGTCCCTACACCTTTACTCCTGAGGTCTGTAAAGCCAAATATGAAGACTTGCAACAACGGTATTCTGGGAGCACGGCTTGGTTTGAGGAGCTTAGGAAGACAAGAGTAGAAGAGCTGAAGAGGGCTCTGGAGCTATCTGAAGATTCAATTGGGTCTCTCAAATCAAAGCTTGAATTCCTCAAGGCTGGGAAGATTGAGAAAAGAAACGATTGTCACACTCACAATGGCTCAGGTAGTACAGAATTACATGTACCATCACAGAAATTGGACAGAGTTGAATCTTTCACTAAAGAAACATCAAAGGATGGGCTATCCGCTGGGAGTTTCACACACGAAACCAGGACAAACTGGTCTTCTGAATGTCCGGTTCCAGCCGGATCTGCTGAAGATATGGAAACTAAACCGGAGGTTTCACACTCTAGTGAACAAGTTAAAGTTTTGAATGTAGATAAGTTGGCACATACTACATATGAAGGACAAGGCAGGTGTCTTAAGAAGCAGAGAGGGAAGAGGAAGAGGAAGGATTGTAGCAGGAATATTAAGGAAGCAAGTGTGGCAGAAAGTGACTTGTTAGATTCAGCTGATGTTTTATCCTGGTGTAAAGAAACTTCTACCAGTAACTGTGGTGAAGTTGCGAAATCTTGTGGCGCTGATGACCAAAATAGGAAGTTGAAAAAGGATGGGGCAGAAGACATGATGGAGATTTTAGATTCTATTTTTGAAACTAAAGGTGCCTCTGCCTTCCGTCGCAGACTAGATAGTCAGAAGAGAGGAAGGTACAAGAAAATGATCCGGCGGCACATGGACTTCGACACTATTAGGTCAAGAATTAGCAGCCAAACAATTAAGTCAACTATAGAACTTTTCCGAGACTTGCTGCTTCTCACTAACAATGCTTTAGTCTTCTACTCCAAGAGCACTCGTGAATACAAATCTGCTCTACTGTTGAGAGATATTGTCACCAAAAAAATGAGAGAGAGTTTGAAGGGTATGAGCAGCAAAACCAACACTGAAGCTAATGTACCTGTTAAATTACCTGTGCAAACTACTCATGTGAAACCAAGAAGCGTGCGCCCGGGCAACAGAAAAATTGTTGCAAAGGCAGTTGGTGGCAGCAACTCTGCGTCTGGGGTGTCACATGGAACCAAGAAACCTAGTAAAGTTGATTCTCCATCATCAGTGGAATCCTTAACTGTCAAGAAGAAAGCTTTTGGTCGACCAAAAAAGGTTGGTGGACGTGGTCAAAGGCCAGCAACACCAACGAAGGGAAAGAAAAGAGTTAGAACAAAGTGA 1416 0.4499 MGTEVMGRWGTWEELLLGGAVLRHGTRDWNVVAAELRARTVCPYTFTPEVCKAKYEDLQQRYSGSTAWFEELRKTRVEELKRALELSEDSIGSLKSKLEFLKAGKIEKRNDCHTHNGSGSTELHVPSQKLDRVESFTKETSKDGLSAGSFTHETRTNWSSECPVPAGSAEDMETKPEVSHSSEQVKVLNVDKLAHTTYEGQGRCLKKQRGKRKRKDCSRNIKEASVAESDLLDSADVLSWCKETSTSNCGEVAKSCGADDQNRKLKKDGAEDMMEILDSIFETKGASAFRRRLDSQKRGRYKKMIRRHMDFDTIRSRISSQTIKSTIELFRDLLLLTNNALVFYSKSTREYKSALLLRDIVTKKMRESLKGMSSKTNTEANVPVKLPVQTTHVKPRSVRPGNRKIVAKAVGGSNSASGVSHGTKKPSKVDSPSSVESLTVKKKAFGRPKKVGGRGQRPATPTKGKKRVRTK* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1373 471 Coils Coil 77 97 - -
Apr1g1373 471 SUPERFAMILY Bromodomain 270 370 IPR036427 GO:0005515
Apr1g1373 471 MobiDBLite consensus disorder prediction 409 471 - -
Apr1g1373 471 MobiDBLite consensus disorder prediction 413 438 - -
Apr1g1373 471 PANTHER BROMODOMAIN PROTEIN 1 471 - -
Apr1g1373 471 Pfam Bromodomain 274 354 IPR001487 GO:0005515
Apr1g1373 471 MobiDBLite consensus disorder prediction 135 183 - -
Apr1g1373 471 Gene3D - 259 375 IPR036427 GO:0005515
Apr1g1373 471 ProSiteProfiles Bromodomain profile. 281 351 IPR001487 GO:0005515
Apr1g1373 471 SMART bromo_6 266 370 IPR001487 GO:0005515
Apr1g1373 471 CDD Bromodomain 271 365 - -
Apr1g1373 471 PANTHER BROMODOMAIN-CONTAINING PROTEIN 8 1 471 - -
Apr1g1373 471 MobiDBLite consensus disorder prediction 140 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1373 Apr-Chr1 22696699 22702640 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Apr1g1373 Bromodomain 1.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1373 - - gmx:100804245 773.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1847 3 34381408 34385871 Apr1g1373 1 22696699 22702640 PCT