Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1358 ATGGCCTCTGCTTCATCTTCTTCGTCGAAGCTCTGTTTCAATTCGGAGTGCAAAGAATTGAAGCCCGAAAGACCTAAGAAAGGTTGGAGACTTCGTAGCGGAGACCTAGCCGAGCTATGTGATCGATGCGGATCTGCTTTTGAAGAAGGGAGGTTCTGTGAGATTTTTCACTCTACTGCTTCTGGTTGGAGGAGTTGTGAAACTTGTAGGAAGCGGATTCATTGTGGGTGTATTGTTTCAAGTCATGCATTTGTGTTGTTGGATCCTGGAGGAGTTGAATGCTTTGCCTGTGCCCGCAAAAATATTATTTTGCCATCTAACCTGCCATGGCCACAATCTTTTTCCCTTCAAAATCGTTTATCGGATAGACTTAGAGACTTATCTGCCAAAAGTTGGAGTCAGTTAGCTGGATCAGGTCCTGTACCATGGAAGCAAGCGCCCAGTCTGTTCAATTCAGCTTCTTCATCTGACCTGCTTCCAGATGTGCCTTCTTTAGTTGAATTATCAAATAGCTTTGACAAAATTTATGGCAATGAAAGGTTACCTGCCTCGGCCCTGGAAAAGAAAAATGAGGATTTGACTGGAATATCAGTTAATTGGAGTGTCAAGCTTGGCTCACGGGAAATGATGCTTATGAATGGGATGAGGAGTGAGGACAAATCAAGTTCATGTTTAAGTATGTGCCAACAGCCTCCTTCTCTGAAGGAAGATTCATCTCCTCAACCATTTGGTATGCCTGTACCTTATTCATCACAAAATGAAAGAAATGGCCAACTTGGGGTAACAGGAAATCATCCACAACAAACACCACTTCCTCCGGGAAAGCAATTTAATGGCACTATGCATTTAGCACCTGACTCATCAGGTGAAGCACAGGTTCGCAATGGGCGGCCTCGAGCTGATGCTCGAGGAAGAAACCAGTTACTTCCTCGGTACTGGCCCAGGTGTACTGATCTGGAGCTCCAGCAAATATCTATAGATTCTAATTCTGTAATTACTCCCTTGTTTCAAAAAACCTTGAGTGCTAGTGATGCTGGGCGAATTGGGCGTTTAGTGCTACCCAAAAAGTGTGCTGAGACCTACTTCCCACCAATTTCCCAGCCCGAAGGATTGCCACTTAAAATCCTTGATGCAAAAGGCAAGGAATGGATATTTCAATTTCGCTTCTGGCCAAACAATAACAGCAGAATGTATGTTTTAGAGGGTGTCACTCCATGCATACAGTCCATGCAGTTGCAGGCTGGTGACACTGTAACATTTAGCCGGTTGGAGCCAGAAGGGAGGTTGGTGATGGGATTTCGAAAAGCTTCAAGTGCTGTGCCGTCCGATCAGGACAATGAAACCAATAAGACTGGAAATGGATTTTCTACACATGGTGAAGCTGAATTGGCTGATCCTAATTCATGGTCTAAAGTTGATAAGTCAGGCTACATAGCAAAAGAAGCCCTGGGGAGCAAATCTTTAATATCTAGAAAGCGAAAAAGCAGCATATTGGGTTCAAAGAGTAAACGACTAAGAATTGAAAATGAGGATTTAATAGAGCTGAAGATTACATGGCAAGAAGCTCAAGGTCTGCTCCGTCCCCCTCCTAGCCATGTTCCAAGCATTGTGGTGATTGAAGGTTTTGAATTTGAGGAATATGAGGAAGCTCCAGTGCTTGGGAAGCCAACAATTTTTACCAGTGATAATGTGGGTGAAAAGGTCCAGTGGGCTCAATGTGAAGATTGTCTCAAGTGGCGTAAATTGCCAGCAAGTGCACTTCTTCCATCAAAGTGGACATGTTCTTATAATTCATGGGATCCAGAGAGATCGTCTTGTTCAGCTGCGCAAGAGCTGACAGCAGAAGAACTTGAGAATTTGCTACCTCCTTGTAATTCAGCTGTTTCCAAGAAAATGAAGGCCGCTAAGCAGGACCCTGATAATGCTGAAGCTTTGGAAGGACTTGACACACTTGCAAATCTAGCTATCCTGGGAGAGGGTGAGGCACTACCGGCATCTGCCCAGGCCACAACTAAGCACCCACGTCATAGACCTGGCTGCTCTTGCATTGTTTGTATTCAGCCTCCCAGTGGAAAGGGCCCCAAACATAAGCAGTCATGCACATGTAATGTCTGCTTAACTGTGAAGAGACGCTTCCGTACGCTTATGTTACGGCGTGAAAAGAAGCAATCAGAAAGAGAAGCAGAGACAACTCGTAAAAAGCAGCAGCAACAGCATCCTCAACCATTACCTTCATCAGAAATTTTACTTGATGAAGATTCCTTGCCTTGTAACACAGGTGATAGTAGCCCAAACCAGAACAAAGAGGGTAATGACGGTTCTGATGATGATCCTAACCGGATAAAATCATCTATGTCACCATTCAAAGGACAAATCGACCTCAATATCCAGCCAGAGCGAGAAGAAGAATTATCACCTGGTTCAGATTCTGGTGGCATGATGAAGTTGCTCCATGATGCTTCTGAGATGTATCTCAAGCATCCAACTGTATTGAACTCTGGAACTGGAGATTCATCAGGTAGTCAGTCACAGCAGTTAGAAGGAGCGAGGGAAGAGAAACTTAGCAATGGTGTTGCCCATGGCAGTAGTAGTCATAATGCTGATAAGGAACATACCCAATCTCTGTCTATGAATGTGTGA 2640 0.4439 MASASSSSSKLCFNSECKELKPERPKKGWRLRSGDLAELCDRCGSAFEEGRFCEIFHSTASGWRSCETCRKRIHCGCIVSSHAFVLLDPGGVECFACARKNIILPSNLPWPQSFSLQNRLSDRLRDLSAKSWSQLAGSGPVPWKQAPSLFNSASSSDLLPDVPSLVELSNSFDKIYGNERLPASALEKKNEDLTGISVNWSVKLGSREMMLMNGMRSEDKSSSCLSMCQQPPSLKEDSSPQPFGMPVPYSSQNERNGQLGVTGNHPQQTPLPPGKQFNGTMHLAPDSSGEAQVRNGRPRADARGRNQLLPRYWPRCTDLELQQISIDSNSVITPLFQKTLSASDAGRIGRLVLPKKCAETYFPPISQPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKASSAVPSDQDNETNKTGNGFSTHGEAELADPNSWSKVDKSGYIAKEALGSKSLISRKRKSSILGSKSKRLRIENEDLIELKITWQEAQGLLRPPPSHVPSIVVIEGFEFEEYEEAPVLGKPTIFTSDNVGEKVQWAQCEDCLKWRKLPASALLPSKWTCSYNSWDPERSSCSAAQELTAEELENLLPPCNSAVSKKMKAAKQDPDNAEALEGLDTLANLAILGEGEALPASAQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQSCTCNVCLTVKRRFRTLMLRREKKQSEREAETTRKKQQQQHPQPLPSSEILLDEDSLPCNTGDSSPNQNKEGNDGSDDDPNRIKSSMSPFKGQIDLNIQPEREEELSPGSDSGGMMKLLHDASEMYLKHPTVLNSGTGDSSGSQSQQLEGAREEKLSNGVAHGSSSHNADKEHTQSLSMNV* 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1358 879 MobiDBLite consensus disorder prediction 436 468 - -
Apr1g1358 879 CDD B3_DNA 334 435 IPR003340 GO:0003677
Apr1g1358 879 MobiDBLite consensus disorder prediction 217 265 - -
Apr1g1358 879 Gene3D - 568 621 - -
Apr1g1358 879 Gene3D - 314 440 IPR015300 -
Apr1g1358 879 SUPERFAMILY DNA-binding pseudobarrel domain 333 435 IPR015300 -
Apr1g1358 879 MobiDBLite consensus disorder prediction 857 879 - -
Apr1g1358 879 SMART B3_2 336 437 IPR003340 GO:0003677
Apr1g1358 879 Pfam B3 DNA binding domain 336 435 IPR003340 GO:0003677
Apr1g1358 879 MobiDBLite consensus disorder prediction 439 456 - -
Apr1g1358 879 MobiDBLite consensus disorder prediction 217 237 - -
Apr1g1358 879 MobiDBLite consensus disorder prediction 717 879 - -
Apr1g1358 879 MobiDBLite consensus disorder prediction 831 850 - -
Apr1g1358 879 ProSiteProfiles Zinc finger CW-type profile. 564 614 IPR011124 GO:0008270
Apr1g1358 879 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 7 811 - -
Apr1g1358 879 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300-LIKE ISOFORM X1 7 811 - -
Apr1g1358 879 MobiDBLite consensus disorder prediction 244 265 - -
Apr1g1358 879 Pfam CW-type Zinc Finger 569 611 IPR011124 GO:0008270
Apr1g1358 879 MobiDBLite consensus disorder prediction 718 734 - -
Apr1g1358 879 ProSiteProfiles B3 DNA-binding domain profile. 336 437 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1358 Apr-Chr1 22553721 22567318 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1358 9 737 B3 DNA Binding Superfamily AT2G30470 43.364 4.48e-170 511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Apr1g1358 B3 1.3e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1358 - - gmx:100807252 1604.34