Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1352 ATGCCGAGTTTCACCTCCTTCTTCCATCGTCTTTCTGGATTTGTCCGTGACAATCAGTCGCATGTCAAGCTTGTACTGCTCTGCACCACCATAAGTGGTTGCGGTGTTTTGGCTTATGGTGAGGCTGTTGCACCCGAGGCGGCGGTTACAGAGAAGAAAAAGGTGGTGGTTTTGGGAACTGGTTGGGCGGCCACAAGTTTCTTGAAGAATCTGAACAATTCGAAATATGAGGTTCAAGTAGTTTCGCCTCGTAACTATTTTGCATTCACTCCTTTGCTGCCTAGCGTCACGTGCGGCACCGTCGAAGCACGCAGCATTGTTGAACCGGTTCGCAATATCGTTCGGAAGAAAACGGTGGACATACAATTCAATGAAGCAGAATGTGTCAAAATTGATGCAGAAAATAGGAAAGTTTACTGCCGATCTAATGCGAGCAATAATTTGAATGGGAGAGAAGAATTTGTCGTGGACTATGATTACCTAATCATTGCCGTGGGCGCCAATGTCAACACTTTTAATACTCCAGGAGTGGTGGAGAATTGTCATTTTTTGAAGGAAGTTGAAGATGCTCAGAAGATTAGAAGAACAGTTATTGACTGCTTCGAGAGAGCAAATTTGCCCGATGTAAGTGAAGAAGAGAAGAAGAGAATTCTTCATTTTGCTATTGTTGGGGGTGGTCCTACTGGAGTGGAGTTCGCAGCCTCGCTTCATGATTTTGTCAAAGACGATTTGGTTCGCTTATATCCTGGGATAAAAGATTTAGTTAAAATTACACTTCTGGAGGCGGGAGATCATATCTTGGGCATGTTTGACAAAAGAATCACTGCTTTTGCTGAAGACAAGTTTCGAAGAGATGGAATTGATGTGAAAACAGGATCCATGGTGGTTAAGGTATCTGATAAAGAAATTTCCACTAAAGAACTGAAAAATGGAGGAGAGATTACTACGATTCCGTATGGAATGGCTGTCTGGTCAACTGGTATTGGCACTCGTCCATTTATTAAAGATTTTATGACACAAATTGGTCAGGCTAGCAGGCGTGCTCTAGCTACTGACGAATGGTTGAGAGTTGAGGGGTGCAACAATGTGTATGCACTTGGTGATTGTGCTACGATAAACCAGCGAAAAGTCATGGAAGATATTGCGGCGATCTTTAAAAAGGCTGATAAAGTAAATTCTGGAACACTTACTGTGAAAGAATTTCAAGAGGTCATGGAAGATACCTGTGAAAGATACCCTCAAGTTGAGCTATATCTGAAGAATAAACAGATGCGCAACATCGCTGATTTATTGAAGGGAGCCATCATAGATGACAAAAAAGAGTCAATTGAACTCAATATCGAAGAGCTCAAAACAGCACTTTCCAAAGTGGATTCTCAGATGAAGTTTCTTCCTGCGACAGCGCAGGTTGCATCTCAGCAAGGCACTTACCTGGCTAAGTGTTTTAACCGGATGGAAGACTGTGAAAAAAATCCAGAGGGTCCTCTCAGGTTCAGGGGAGAAGGTCGCCATCGGTTCAAACCCTTTAGGTACAAGCATTTAGGTCAATTCGCTCCTTTGGGAGGAGAGCAGACAGCTGCCCAGCTTCCTGGGGATTGGGTTTCAATTGGCCACAGCAGTCAATGGCTGTGGTATTCTGTCTATGCAAGCAAGCAAGTAAGCTGGCGTACAAAGGCGTTAGTAGTTACAGACTGGACAAGACGCTTTATTTTTGGAAGGGACTCAAGTCGCATCTGA 1737 0.4375 MPSFTSFFHRLSGFVRDNQSHVKLVLLCTTISGCGVLAYGEAVAPEAAVTEKKKVVVLGTGWAATSFLKNLNNSKYEVQVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKTVDIQFNEAECVKIDAENRKVYCRSNASNNLNGREEFVVDYDYLIIAVGANVNTFNTPGVVENCHFLKEVEDAQKIRRTVIDCFERANLPDVSEEEKKRILHFAIVGGGPTGVEFAASLHDFVKDDLVRLYPGIKDLVKITLLEAGDHILGMFDKRITAFAEDKFRRDGIDVKTGSMVVKVSDKEISTKELKNGGEITTIPYGMAVWSTGIGTRPFIKDFMTQIGQASRRALATDEWLRVEGCNNVYALGDCATINQRKVMEDIAAIFKKADKVNSGTLTVKEFQEVMEDTCERYPQVELYLKNKQMRNIADLLKGAIIDDKKESIELNIEELKTALSKVDSQMKFLPATAQVASQQGTYLAKCFNRMEDCEKNPEGPLRFRGEGRHRFKPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTKALVVTDWTRRFIFGRDSSRI* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1352 578 ProSiteProfiles EF-hand calcium-binding domain profile. 376 411 IPR002048 GO:0005509
Apr1g1352 578 SUPERFAMILY FAD/NAD(P)-binding domain 52 271 IPR036188 -
Apr1g1352 578 SUPERFAMILY FAD/NAD(P)-binding domain 219 373 IPR036188 -
Apr1g1352 578 Coils Coil 440 460 - -
Apr1g1352 578 PANTHER NADH DEHYDROGENASE 5 578 IPR045024 GO:0003954|GO:0006116
Apr1g1352 578 PRINTS FAD-dependent pyridine nucleotide reductase signature 158 176 - -
Apr1g1352 578 PRINTS FAD-dependent pyridine nucleotide reductase signature 219 237 - -
Apr1g1352 578 PANTHER NAD(P)H DEHYDROGENASE B2 5 578 - -
Apr1g1352 578 Pfam Pyridine nucleotide-disulphide oxidoreductase 53 379 IPR023753 GO:0016491
Apr1g1352 578 Gene3D - 44 435 - -
Apr1g1352 578 Gene3D - 442 577 - -
Apr1g1352 578 SUPERFAMILY EF-hand 369 465 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1352 Apr-Chr1 22473697 22478751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1352 6 578 Chloroplast and Mitochondria Gene Families AT4G21490 73.575 0.0 862
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1352 K03885 - gmx:100797657 1041.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1879 3 34746978 34752369 Apr1g1352 1 22473697 22478751 PCT