Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1351 ATGGGTGACGAACAACTGTCCCCCACCCCCGGCTCGGGTCTCCGGCGAGCCGTCGAGCTCGTCTCTTCCTTGATCTCCCTTTCCTACTCGACCAGAGTCTTCGCCGGAAAATGGCAACTGATTCGAACCAAGCTCGAGGAGCTCCATTCGGGGCTCATCGCCGGTGAGTCCCCGTCGCTCTCCGGCGTGCTCCCGGCGATAATGGGCACCGTGGAAGAGTGCCACGAGCTGGCACGGCTGTGCGTGGATCTGTCCTACAGCGGAAAGCTTTTGATGCAGAGCGATTTGGACGTGACGTTGGGGAAATTGGAAGAGCACGTGAAGAAGGTATCTGAGATATACAAGAAAGGTTTTTTGATGCATAGCCACGCTGTGATTGTTTCAAGGCCTTGTCTTGGTGCTTGCAAAGAGGACATGAGGTTCTACCTAAGGGACTTGCTCACTAGGATGAAGGTTGGTGATTTGGGTATGAAGAAACAAGCCTTGGTTAATTTGCACGAGGTTGTTGTGGAAGATGACAAATATGTTAAGTTGGTTTTTGAAGTTTCTGACTTTGTTCATGTCTTGGTGGAATTTCTTGGTTCCTCTGAGGTTGAGATTCAGGAAGAGACTGCTAATGTTGTTTCTGTGGTTGTGGGGTTTGATTATTATAGAGGGGTGTTGATTGCTGCTGGGATTATTGCACCCTTGATTCGGGTTTTGGAGTGTGGGAGTGAGCTGGGGAAGGTTGGTGCTGCTAATTGTTTGCGTAGGTTAACTCAGAATTCGGATAATGCTTGGTGTGTTTCGGCTCATGGGGGTGTCACTGCCTTGTTGAAGATTTGTGATAGTGTGGATTCTAAAGGGGAGTTGATTGATCCTGCTTGTGGGGTGTTGAGGAATCTTAGTGGTGTTGAAGAAATCAAGAGGTTTATGGTTGAGGAGGGTGTGGTTTCCTTGTTTGTGAGACTTGTGAGGTCCAAGGATGAAGCAATTCAGGTGAGTGCCATTGAATTCATCCAAAACATTGCCTCCGGTGATGAATTGGTTAGGGAGGTGGTGATTAGAGAAGGTGGGGTTCGTGTTCTGATGCGTGTTTTGGATCCTAGATGCACTTGTTCTTCTAAAACAAGGGAGGTGGTGATGAGAGCTATTGAAAATTTGTGTTTTTCTTCGGCTAGTTATGTTAGTATTTTGATGAGTTATGGCTTTGTGGATCAGCTGCTCTATTATGTGCGAAATGGGGAGGTTTCAATTCAAGAGCTGGCACTGAAAGTGGCATTTAGATTTGGTGGAACATCAGAGGAGGCTAAGAAAGCTTTGGGAGATGCTGGCTTCATGGCAGAGCTTGTTAAGTTTCTAAATGCAAAATCATTTGAAGTTCGCGAAATGGCAGCTGAGGCACTCTCTGGTATGGTTATGGTACCAAAAAATAGAAAGAGATTTGTGCAAGATGATCAAAACATTACTCTTCTTCTGCAATTGCTAGATCCGGAGGAGGGAAATTCAGGTAATAAAAGGTTGTTAGTCTCTATCCTAATGTCCTTAACAAGTTGCAACAGTGGGAGGAAAAAGATTGTGAGTTCTGGGTATGCCAAAAACATAGAGAGACTTGCAGAAGCTGAAGTCTCTTCTGATGCCAAGAGGCTTGTGAGGAAGCTATCCACAAACCGGTTCCGCAGTATGTTGAGTGGAATCTGGCACTCTTGA 1689 0.463 MGDEQLSPTPGSGLRRAVELVSSLISLSYSTRVFAGKWQLIRTKLEELHSGLIAGESPSLSGVLPAIMGTVEECHELARLCVDLSYSGKLLMQSDLDVTLGKLEEHVKKVSEIYKKGFLMHSHAVIVSRPCLGACKEDMRFYLRDLLTRMKVGDLGMKKQALVNLHEVVVEDDKYVKLVFEVSDFVHVLVEFLGSSEVEIQEETANVVSVVVGFDYYRGVLIAAGIIAPLIRVLECGSELGKVGAANCLRRLTQNSDNAWCVSAHGGVTALLKICDSVDSKGELIDPACGVLRNLSGVEEIKRFMVEEGVVSLFVRLVRSKDEAIQVSAIEFIQNIASGDELVREVVIREGGVRVLMRVLDPRCTCSSKTREVVMRAIENLCFSSASYVSILMSYGFVDQLLYYVRNGEVSIQELALKVAFRFGGTSEEAKKALGDAGFMAELVKFLNAKSFEVREMAAEALSGMVMVPKNRKRFVQDDQNITLLLQLLDPEEGNSGNKRLLVSILMSLTSCNSGRKKIVSSGYAKNIERLAEAEVSSDAKRLVRKLSTNRFRSMLSGIWHS* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1351 562 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 9 562 - -
Apr1g1351 562 Gene3D - 143 551 IPR011989 -
Apr1g1351 562 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 266 310 IPR000225 GO:0005515
Apr1g1351 562 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 309 352 IPR000225 GO:0005515
Apr1g1351 562 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 9 562 - -
Apr1g1351 562 SUPERFAMILY ARM repeat 144 543 IPR016024 -
Apr1g1351 562 SMART arm_5 298 338 IPR000225 GO:0005515
Apr1g1351 562 SMART arm_5 172 213 IPR000225 GO:0005515
Apr1g1351 562 SMART arm_5 427 467 IPR000225 GO:0005515
Apr1g1351 562 SMART arm_5 255 297 IPR000225 GO:0005515
Apr1g1351 562 SMART arm_5 214 254 IPR000225 GO:0005515
Apr1g1351 562 SMART arm_5 340 383 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1351 Apr-Chr1 22461239 22463353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1351 126 416 U-box Gene Family AT2G23140 25.168 6.67e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1351 - - gmx:100783537 905.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1881 3 34779785 34782523 Apr1g1351 1 22461239 22463353 PCT