Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1348 ATGGGGAGAGCACCTTGTTGTGACAAGAATGGCCTCAAGAAAGGACCATGGACAACCGAGGAGGACCAGAAACTCATCGATTACATTCAGAATCATGGGTATGGCAATTGGAGGACACTCCCAAAGAATGCTGGGTTGCAAAGATGTGGAAAGAGTTGCCGTCTTCGGTGGACAAACTATCTCCGACCAGATATAAAGCGAGGTCGGTTTTCATTTGAAGAGGAAGAGACAATAATTCAGCTACATAGCATTCTTGGCAACAAATGGTCTGCGATTGCATCTCGCTTACCAGGAAGAACAGACAACGAAATCAAGAACTATTGGAACACCCACATTAGAAAAAGGCTTCTGAGGATGGGAATTGATCCTGTGACACACAGTCCACGGCTTGACTTATTGGACATCTCATCCATTCTAAGCGCATCTTTGTATGGTTCATCACAAATGAACATCCAAAGGCTCCTTGGCATGCAGCAACCTTTGGTGAACCCAGAGCTTCTAAAGTTGGCTTCCTCACTCGTTCCCTCTTCACAGCAACACAAAGACCTTGACCTATGTGCTCAAAATGGTCATCAACAACAGAACCAGCTCAGCTATCCCCAAATTCAGAATCAAATCCCACAATTTGTCCAATTTGAAGACTCAGTTCAAGAAGTGCCTGCATGCACCACATTCAGCCCCCCTTGTGTTTCATTGCCTCTAACTCAACCACAGTTAGTTGAGTCTAACAATGTAGACCCATACTCATCATCAAGTTTCACCGACTTTAGTTACCAACATCATTCTCATCAACTAAGTGATTGGACCAAAAATGGGATTGATTTAAGAACCTTAACAGATGACTACATCCCTCAGTTATCAAGCTATAATTATTATGGTTCTGATTGTCAAAATCTCATGTATCCTCCATCGTCCGAAACTTCAACCTTCCATTCCAATAACAGCAATCCGAACTTCAGCTTCGCTTCAGTTCTATCCACACCTTCGTCAAGCCCCACGCCGTTGAATTCGAACTCCACGATAATCAATGGGAGCAACACAGAAGATGAGAGAGAAAGCTACGAAAGTAGTAACATGTTGAAATTCGAAATCCCAGATATTTTAGATGTGAATGAGTTGATCATGTAA 1128 0.4291 MGRAPCCDKNGLKKGPWTTEEDQKLIDYIQNHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGNKWSAIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDISSILSASLYGSSQMNIQRLLGMQQPLVNPELLKLASSLVPSSQQHKDLDLCAQNGHQQQNQLSYPQIQNQIPQFVQFEDSVQEVPACTTFSPPCVSLPLTQPQLVESNNVDPYSSSSFTDFSYQHHSHQLSDWTKNGIDLRTLTDDYIPQLSSYNYYGSDCQNLMYPPSSETSTFHSNNSNPNFSFASVLSTPSSSPTPLNSNSTIINGSNTEDERESYESSNMLKFEIPDILDVNELIM* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1348 375 Gene3D - 13 66 - -
Apr1g1348 375 CDD SANT 69 112 IPR001005 -
Apr1g1348 375 SMART sant 66 114 IPR001005 -
Apr1g1348 375 SMART sant 13 63 IPR001005 -
Apr1g1348 375 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Apr1g1348 375 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Apr1g1348 375 CDD SANT 16 61 IPR001005 -
Apr1g1348 375 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Apr1g1348 375 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Apr1g1348 375 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Apr1g1348 375 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Apr1g1348 375 MobiDBLite consensus disorder prediction 323 347 - -
Apr1g1348 375 MobiDBLite consensus disorder prediction 323 356 - -
Apr1g1348 375 Gene3D - 69 116 - -
Apr1g1348 375 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 365 - -
Apr1g1348 375 PANTHER TRANSCRIPTION FACTOR MYB74 1 365 - -
Apr1g1348 375 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1348 Apr-Chr1 22431821 22433585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1348 1 375 MYB Transcription Factor Family AT4G21440 54.639 1.66e-121 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr1g1348 Myb_DNA-binding 2.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1348 K09422 - gmx:778071 573.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1884 3 34839700 34841472 Apr1g1348 1 22431821 22433585 PCT