Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1346 ATGGGGAAAAAATCGGAAGAAGAAGAAGCGCTCCCGGAGCATCTGCGATGCAGCCGCACCGACGGGAGGCAATGGCGGTGCCGGCGGCGAGTGATGGAAGACCTAAAGCTGTGCGAGATTCACTATCTACAAGGTCGGCATCGGCAGTACAAGGAGAAGGTTCCCGAGTCACTGAAGCTTCAGAGAAAGAGGAAAAACGACGTCGTTGAGAATAAGATTAGGGCGAAGAAGAAGCGAAAAGCCAAAGAGGCATTGGTGGCAAAGAGGAACCAATTGGAGCTGATAAGGATGGTTCTGCAGAGAGAGGTTGAGAAGAAGAAAACGAAGGAATGGCAGTTGCAATTGCATTGTAACAATGAGAGTGAAGGAGAGTTGAGGAAGGAATTGCCAAATGGGGTTATGGCTATTGCTCCTGCTTCAATGCCTAATGTCAATGTACCTTCTCATTCACGTTACTTCAGGTCCAAGAATGCTTCTGTTGGTACGTTGCATTTGCAGGTTGTTCCTTATGGCCGAAACTTGAAGAAGGGTAGACGGAATAAGTGTCATTGGTGCCAGAGAAGTGATTCTTGGAATCTTATAAGGTGTTCATGCTGCCAGAGAGAGTTTTTCTGCATGGATTGCATTAAACAACGGTATTTTGACACTCAAAATGAGGTTAAGACGGCATGTCCAGTTTGTCGAGGAACTTGCACCTGTAAAGATTGCTTGGCAAGTCAATACAAGGACAATGAAAGTAAGGAATATTTGGCTGGTAAAAACAGAGGTGATAGGATATTACATTTTCATTATTTGGTCTGTATGCTCCTTCCTGTACTAAAACAAATAAAAGAAGATCAGAATGCGGAGCTAGAACCAGAAGTGAAAACTAAAGGGAAAAGCATTTCTGATATTCTTGTCAAGCAGGTCGAATCTGGCTGCAATGAGAAAAATTACTGCATTTACTGCAAAACACCCATTTTGGATCTTCATACAAGCTGCCTTAGTTGTTCCTATAGTCTTTGCTTAAGTTGTTGTCAAGACTTAAGTCAAGGAAGCGGCTCTGAAGAAATCAACTCTTCTATATCCAAGCTAGAGGATAAGGCCATTTCTAATGGCAATTTAACTGATAGCTCAATAATACCTGAGTGGACGAGTTGTAATGGTACTGACATTGTGTCATGCTCACCTACAAAGCTTGGTGGTTGTGGTGATAACCACCTTGATTTGAAATGTGTTTTTCCCTTAAGTTGGATCAAAGAAATGGAAGTAAAAGCAGAAGAAATAGTTTGTAGCTATGACTTTCCTGAAACTTCAGATAAAAGTTCAAGCTGCTCGCTATGCATTGACAAAGATCAGAAAATTAACAGATATAAGCAATTACAAGAAGCAGCTAAGAGGGAAGATTCTAATGATAATTGCTTATTTTACCCTACAGTTTTGGACCTCAGTAGCGATCATTTTGAGCACTTTCAGAAACACTGGGGAAAAGGACATCCTGTAGTAGTGCGAGATGTGCTCCAAAGTACACCAAACCTTAGTTGGGATCCACTTGTCCTGTTCTGTGCTCATTTTGAGAGGAGCATGATGAGATATGAGAATAATAAGGACTTACTTGAAGCTTGTCTGGATTGGTTTGAGGTGGAAATTAACATTAGCCAGTATTTTACTGGGTCTCTAAAGTGTCAACCTCAGAAAAATACTTGGCATGAGATGCTGAAAATAAAAGGGTGGTTGTCTTCTCAGCTATTCAAAGAACAGTTTCCAGCTCATTTTGCTGGAGTAATCGATGCTCTTCCAATTCAAGAATACATGAATCCCCTGTCTGGTCTTCTGAATTTAGCTGCAAATTTGCCACGGGGGAGTAAAAATCATGACATGGGACCATATGTCTTTATTTCATATGGCTGTGCTGATGAAGAAGCTGATTCTGTGACCAATCTCTGTTATGGCTCATGTGATCTGGTTAATATTATGGCACATACCACAGAGGTCCCTCTCTCAACAGATCAGCTTGCTAAAGTAACTAAGTTATTGAAAAAACACAAATCTCTGTGTCAAAGGATGTCTTCTAAAACTACTATTGAGCATGAAGAAGATGGGGAGCAAAATGAAACACGGAGTATAGTAAGAGAAGGAACTGACTTTTTCAGGAGAATCAATAGAACATCTTACATCTCTACTGAAGCCAAGACAATATCAAAGCGTAGTTTAGACACCAATATTTCCAGTGATGGAGAATGTTGTTCCAATTCTGAAACTGAGAAGACACGAAGCTCTTTCCACGCAACAGTTCTAAGCACTGAGAATTCTTGTGCCCAGTGGGACATATTTCGAAGACAGGATGTGCCAAAGCTCTTGGAATACCTTAAAAGACACTCTGATGAATTCTCTTATGCCAGTGAATATCACGAGAAGATTGTTCATCCCATTCTAGATCAGAGCTTCTTTCTTGACAATGCTCACAAGATGAGACTTAAGGAGGAGTTTAGTAAGTATATGCATTATCATCTTTTACAGTCTTGCATAAGTAAATTGACTTACCTTTCACTGTTTCCAGAGATTGAACCGTGGACTTTTGAGCAACGAGTTGGAGAAGCTGTCATCATACCTGCTGGATGTCCTTATCAGATTAGGAACCCTAAGTGTTGTGTTCATGTGGAAATGGAATTTGTGTCCCCTGAGAATGTTACCGAATGTATCCAATTGATTGATCAGGTCCAGCTGCTTCCAAAAGACCATAAAGCAAAAGTAGAAAAGCTGGAGGTGAAAAAAATGGCCCTTCATAGGATGAGTGCAGCAATAAAGGAAATACGTGAGCTTACTTGCAGAACATGA 2817 0.4089 MGKKSEEEEALPEHLRCSRTDGRQWRCRRRVMEDLKLCEIHYLQGRHRQYKEKVPESLKLQRKRKNDVVENKIRAKKKRKAKEALVAKRNQLELIRMVLQREVEKKKTKEWQLQLHCNNESEGELRKELPNGVMAIAPASMPNVNVPSHSRYFRSKNASVGTLHLQVVPYGRNLKKGRRNKCHWCQRSDSWNLIRCSCCQREFFCMDCIKQRYFDTQNEVKTACPVCRGTCTCKDCLASQYKDNESKEYLAGKNRGDRILHFHYLVCMLLPVLKQIKEDQNAELEPEVKTKGKSISDILVKQVESGCNEKNYCIYCKTPILDLHTSCLSCSYSLCLSCCQDLSQGSGSEEINSSISKLEDKAISNGNLTDSSIIPEWTSCNGTDIVSCSPTKLGGCGDNHLDLKCVFPLSWIKEMEVKAEEIVCSYDFPETSDKSSSCSLCIDKDQKINRYKQLQEAAKREDSNDNCLFYPTVLDLSSDHFEHFQKHWGKGHPVVVRDVLQSTPNLSWDPLVLFCAHFERSMMRYENNKDLLEACLDWFEVEINISQYFTGSLKCQPQKNTWHEMLKIKGWLSSQLFKEQFPAHFAGVIDALPIQEYMNPLSGLLNLAANLPRGSKNHDMGPYVFISYGCADEEADSVTNLCYGSCDLVNIMAHTTEVPLSTDQLAKVTKLLKKHKSLCQRMSSKTTIEHEEDGEQNETRSIVREGTDFFRRINRTSYISTEAKTISKRSLDTNISSDGECCSNSETEKTRSSFHATVLSTENSCAQWDIFRRQDVPKLLEYLKRHSDEFSYASEYHEKIVHPILDQSFFLDNAHKMRLKEEFSKYMHYHLLQSCISKLTYLSLFPEIEPWTFEQRVGEAVIIPAGCPYQIRNPKCCVHVEMEFVSPENVTECIQLIDQVQLLPKDHKAKVEKLEVKKMALHRMSAAIKEIRELTCRT* 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1346 938 ProSiteProfiles JmjC domain profile. 600 901 IPR003347 -
Apr1g1346 938 SMART cupin_9 581 901 IPR003347 -
Apr1g1346 938 Coils Coil 89 109 - -
Apr1g1346 938 ProSiteProfiles Zinc finger RING-type profile. 182 228 IPR001841 -
Apr1g1346 938 Gene3D Cupin 472 910 - -
Apr1g1346 938 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 847 937 IPR045109 GO:0032454|GO:0033169
Apr1g1346 938 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 6 823 IPR045109 GO:0032454|GO:0033169
Apr1g1346 938 Coils Coil 937 938 - -
Apr1g1346 938 SUPERFAMILY Clavaminate synthase-like 768 927 - -
Apr1g1346 938 PANTHER PROTEIN B160 847 937 - -
Apr1g1346 938 PANTHER PROTEIN B160 6 823 - -
Apr1g1346 938 Coils Coil 444 464 - -
Apr1g1346 938 Pfam JmjC domain, hydroxylase 835 884 IPR003347 -
Apr1g1346 938 ProSiteProfiles WRC domain profile. 11 57 IPR014977 -
Apr1g1346 938 Pfam WRC 12 53 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1346 Apr-Chr1 22389904 22395461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1346 12 51 GRF Transcription Factor Family AT2G22840 55.000 1.07e-07 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Apr1g1346 JmjC 9.3e-07 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1346 K15601 - gmx:100799234 1405.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1886 3 34857700 34863884 Apr1g1346 1 22389904 22395461 PCT