Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1342 ATGGAGTTTGATCTTGAAGACCCACTTGCCATCTTCAGAGAAGAGCAAAACTTTAGTATATCAGAACTCTTTGTCTCCGAATCTGATCACATGCCCTTACCAAACTGCTTATGTTCAACACCTTTTCATGTTTCCTTCCGTTGTGAAGCCATGTCTCTCATACTTCAGGTTCAGCTATCTTGCAATTTAGACCCATTTGTAGCATACCTTGCTATAAATTACTTGCAGCGTTTCATGTCAAGCCAAGAAATTCCGGGGAAGCCGTGGTTTCTCAGGCTTCTTGTTATATCCTGCATTTCTCTTGCTTCAAAGATGAACAACAAAACTTTTTCATTTTCTGATATGAAGAAAGAAGGTTGCAACTTTGAGGCTCAAAGTATTCAGAATATGGAGCATCTTATTCTCGGGGCTCTGAAATGGCGTATGAGGTCAATTACACCTTTTTCTTTCTTGAATTTCTTCATCTCTTTAGATGAAATCAAAGACCAATCACTGCAGCAAGCACTTAAAGAGAGAGCTTCAGAGATTATCTTCAATGCTCAAAATGCAGACATTAAGCTTTTAGAGTATAAACCTTCAACTATTGCGGCAAGTTCCCTTATCTTTGCATCTAATGAACTATTCCCGCAGCAATATTCTATTCTAAGAGCTTCAATTACTGCTTGTGAGTATCTAGATGAGGAGATATTGTCCAAGTGCTTTGATTTGATGCAAGAGACTGTTAGAATGGAAGCAAAAGAGTTAATGATAGATACAAGCTTTTTAAGTAGTGATTGCGAAACTCCAGTGAGTGTGCTAGAGAGAAGCACCAAACGGCAGAGAATTTGA 828 0.3853 MEFDLEDPLAIFREEQNFSISELFVSESDHMPLPNCLCSTPFHVSFRCEAMSLILQVQLSCNLDPFVAYLAINYLQRFMSSQEIPGKPWFLRLLVISCISLASKMNNKTFSFSDMKKEGCNFEAQSIQNMEHLILGALKWRMRSITPFSFLNFFISLDEIKDQSLQQALKERASEIIFNAQNADIKLLEYKPSTIAASSLIFASNELFPQQYSILRASITACEYLDEEILSKCFDLMQETVRMEAKELMIDTSFLSSDCETPVSVLERSTKRQRI* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1342 275 CDD CYCLIN 47 135 IPR013763 -
Apr1g1342 275 SMART Cyclin_C_2 145 263 IPR004367 -
Apr1g1342 275 SUPERFAMILY Cyclin-like 126 244 IPR036915 -
Apr1g1342 275 SMART cyclin_7 52 136 IPR013763 -
Apr1g1342 275 Gene3D - 33 143 - -
Apr1g1342 275 Pfam Cyclin, C-terminal domain 145 265 IPR004367 -
Apr1g1342 275 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 5 273 - -
Apr1g1342 275 SUPERFAMILY Cyclin-like 12 142 IPR036915 -
Apr1g1342 275 Pfam Cyclin, N-terminal domain 24 142 IPR006671 -
Apr1g1342 275 PANTHER CYCLINS 5 273 IPR039361 -
Apr1g1342 275 Gene3D - 23 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1342 Apr-Chr1 22354386 22356158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1342 1 274 Core Cell Cycle Gene Families AT4G03270 40.203 5.44e-63 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1342 K18812 - gmx:100799985 418.313