Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1338 ATGACGAAGAAGTGCGAGCTTTGTAACTGTCCCGCAAAGTTGTTCTGTGAATCAGATCAAGCAAGCCTCTGTTGGGAATGCGATGCAAAGGTTCACAGTGCAAACTTCCTCGTCACCAAGCATCCCAGGTTTCTTCTTTGCCATGTTTGTCAATCACTAACAGCTTGGCACGGAACCGGACCCAAGTTTGTACCCACCATCTCCGTTTGCAACACTTGTGTTAGCAACAGTAATGAGACCTGCAACCAACAGAATCATGATGATGATGATCACGATGATGACGATGATGATGGCTCGGGGGAGGACGATGATATAGAAAACGATGATGTTGGTGTGGACGAAGATGATGAAGAAAATCAAGTGGTTCCATGGACATCTACACCACCACCCCCAGTTTCCCCTTCCTCAAATAGTGTTTCTACTAGTTCTACCAGGTTCTCTAATGTTGAAGATGGTGGCTCAGATTAA 468 0.4573 MTKKCELCNCPAKLFCESDQASLCWECDAKVHSANFLVTKHPRFLLCHVCQSLTAWHGTGPKFVPTISVCNTCVSNSNETCNQQNHDDDDHDDDDDDGSGEDDDIENDDVGVDEDDEENQVVPWTSTPPPPVSPSSNSVSTSSTRFSNVEDGGSD* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1338 155 MobiDBLite consensus disorder prediction 88 120 - -
Apr1g1338 155 CDD Bbox1_BBX-like 4 46 - -
Apr1g1338 155 Pfam B-box zinc finger 3 41 IPR000315 GO:0008270
Apr1g1338 155 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 147 - -
Apr1g1338 155 SMART bboxneu5 1 46 IPR000315 GO:0008270
Apr1g1338 155 MobiDBLite consensus disorder prediction 136 155 - -
Apr1g1338 155 MobiDBLite consensus disorder prediction 81 155 - -
Apr1g1338 155 PANTHER B-BOX TYPE ZINC FINGER PROTEIN 3 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1338 Apr-Chr1 22318341 22321064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1338 1 108 C2C2-CO-like Transcription Factor Family AT4G27310 50.909 1.27e-33 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Apr1g1338 zf-B_box 4.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1338 - - gmx:100805832 205.297