Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1335 ATGAAGAAGATGGAACCTTTTAATCTTACTTATAATTTCCCAAATCAATCTTACTTTGGAATCTTGACCTTGAATCCACAGGGCCAACTTGCATGGGTATGGTGGAACCACGAAAAGTTAGGAAGTAGGGGTGTGTCGGAATCAACTTCTTGTGATCCTTATGGCTATTGTGGGGCATTTGGAAGCTGCAATTGGAAGAGCTCACCATTATGCAGCTGCTTGAGTGGATATGAACCAAAAAATGTACAAGAGTGGAATAGAAAAAATTGGACTAGTGGGTGTGTAAGGAAGGAGCCAATTCAATGTGGGAGACTAAAAAATGGAAGTGTAGTCAGCAAAGATGGGTTTTTGAAACTTGAGAATATGAAAGTGCCAGACTTTGTAGAGAGGTCAGAATCTTTGGAAGATGAGTGCAGAGCACAGTGCCTTGGAAATTGCTTTTGTGTTGCATATGCATATGACAGGGGCATTGGGTGCATGTTTTGGAGCAGAGATTTGATCGACACACAGAAATTTTCAAGTGGTGGAGTTGATCTTTACATTCGTCTGCCCCCTTCAGAACTCGAAAAACATTCTTTATTTAAAAGAAAACACAAGACATTGATAGTTCCAGTTGGAGTGACTATAGGAATGATTACCTTGGTTGGCTGTGCTTATCTCTTGTGGAAATGGACCGCTAAATCAATAGGAAAAATATACTTAAAAAGGCCGAAAATGAAAGAGGATCAGGAACAAGTCAAACTCAATGACGAGGTACCGCTTTTTAATTTTGACGAGCTGGCAAAAGCTACCAACAATTTTAACACAACCCACGTACTTGGTCAAGGAGGCTTTGGTTTAGTATATAAGGGACAGTTGAAAGGTGGACAAGAAATAGCAGTAAAAAGACTTTCAAAAACATCTGGGCAAGGGTTAGAAGAATGTATGAACGAGGTATTAGTGATTTCAAAGCTTCAACATCGCAATCTTGTGAGACTTCTTGGCTGCTGTATTCAACATGAGGAAAATATGTTGATATATGAGTACATGCCTAACAAGAGTTTGGACGTAATACTATTTGATCCAGTAAGAAAAAGGGATCTAGATTGGCCAAAACGCTTCAATATAATTGAAGGAATCTCCCGAGGTTTGCTTTATCTCCACAGAGATTCTAGACTAAAAATTATACATAGAGATTTAAAGCTTAGTAACATCTTGTTGGATGGAGAGCTAAATCCAAAAATATCAGACTTTGGTCTGGCTAGAATCTTTGGAGGCAATGATATACAAGCTAATACTAAAAGGATTGTTGGAACGTTCGGCTATATCCCTCCAGAATATGCATTTCGAGGATTGTTTTCAGAGAAATCTGATGTTTTTAGCTTTGGAGTCTTGTTGCTGGAGATTATTAGTGGGAGAAAAATCAGTAGCTATTATGATAATGACCACTCATTGAGTCTCTTAGGATTCGCTTGGAAATTATGGAATGAAAAGAACATCTCATCTCTGATAGACCCAGAGATATGCAATCCAAATAATGTGAATGACATAGTGAGATGCATGCACATTGGGCTTCTGTGTTTGCAAGAGCTTGCAAAAGAGAGGCCAACTGTGGCTATAGTAGTTTCAATGCTTAATAGCGAGATCGTTAATCTTCCTCCCCCATCCCACCCCCCATTCATCGAAAAGCAAATTATATGGTGTGCAGAGTCATCTCAGCAGAATCTCAGAACGTCCTCCATCAACAATGTTACTGTCACAGACATGCAAGGAAGGTAG 1758 0.3931 MKKMEPFNLTYNFPNQSYFGILTLNPQGQLAWVWWNHEKLGSRGVSESTSCDPYGYCGAFGSCNWKSSPLCSCLSGYEPKNVQEWNRKNWTSGCVRKEPIQCGRLKNGSVVSKDGFLKLENMKVPDFVERSESLEDECRAQCLGNCFCVAYAYDRGIGCMFWSRDLIDTQKFSSGGVDLYIRLPPSELEKHSLFKRKHKTLIVPVGVTIGMITLVGCAYLLWKWTAKSIGKIYLKRPKMKEDQEQVKLNDEVPLFNFDELAKATNNFNTTHVLGQGGFGLVYKGQLKGGQEIAVKRLSKTSGQGLEECMNEVLVISKLQHRNLVRLLGCCIQHEENMLIYEYMPNKSLDVILFDPVRKRDLDWPKRFNIIEGISRGLLYLHRDSRLKIIHRDLKLSNILLDGELNPKISDFGLARIFGGNDIQANTKRIVGTFGYIPPEYAFRGLFSEKSDVFSFGVLLLEIISGRKISSYYDNDHSLSLLGFAWKLWNEKNISSLIDPEICNPNNVNDIVRCMHIGLLCLQELAKERPTVAIVVSMLNSEIVNLPPPSHPPFIEKQIIWCAESSQQNLRTSSINNVTVTDMQGR* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1335 585 SMART ntp_6 111 183 IPR003609 -
Apr1g1335 585 Pfam Protein tyrosine and serine/threonine kinase 269 536 IPR001245 GO:0004672|GO:0006468
Apr1g1335 585 CDD STKc_IRAK 273 539 - -
Apr1g1335 585 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 8 584 - -
Apr1g1335 585 ProSitePatterns Serine/Threonine protein kinases active-site signature. 388 400 IPR008271 GO:0004672|GO:0006468
Apr1g1335 585 Pfam S-locus glycoprotein domain 6 81 IPR000858 GO:0048544
Apr1g1335 585 SMART serkin_6 267 543 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1335 585 ProSitePatterns Protein kinases ATP-binding region signature. 273 295 IPR017441 GO:0005524
Apr1g1335 585 ProSiteProfiles Protein kinase domain profile. 267 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1335 585 Pfam PAN-like domain 112 169 IPR003609 -
Apr1g1335 585 Gene3D Transferase(Phosphotransferase) domain 1 343 544 - -
Apr1g1335 585 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 8 584 - -
Apr1g1335 585 CDD PAN_AP_plant 99 184 - -
Apr1g1335 585 ProSiteProfiles PAN/Apple domain profile. 102 184 IPR003609 -
Apr1g1335 585 SUPERFAMILY Protein kinase-like (PK-like) 250 574 IPR011009 -
Apr1g1335 585 Gene3D Phosphorylase Kinase; domain 1 239 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1335 Apr-Chr1 22281742 22284620 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1335 236 585 Receptor kinase-like Gene Family AT4G11530 51.105 2.22e-121 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Apr1g1335 PK_Tyr_Ser-Thr 8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1335 - - aprc:113849477 1212.98