Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1330 ATGGGAGCTTCTACTAATTCCCATATCTACCTAACATTTTGCTTCAGTTTCTTTAGCAATATTGTGGTATCTCTGGACACCGTAACTGTAATCCAATCTCTTAGAATTAACCAAACACTTGTATCTCCGAAGGAAGTGTTTGAGTTTGGCTTCTTTAGCCCAAGCAGCTCCATATGGTACTTGGGTATTTGGTACAAGGACATTCCTGACAAAACAGTAGTTTGGGTGGCAAATAGGGACACCCCACTTCAAAATTCTAATGGAACTCTCAGGATTGGAGACAAGGGAAATCTTGTTCTTCTTGATCAAACACGTAAATCTGTATGGTCACCACCAAATCAAACCACTGGTGCAAATTCGGTTCTTCAAATTTTGGACTCTGGAAATTTGATTCTCAAAGAAACAAACAAGAACGACACTACCAATTCTTTGTGGCAAAGCTTTGATCATCCAATAGATACACTGTTACCAGGTATGAAGCTGGGTTTGAACTTGGACACTGGCGTTGAGCACCGTTTAACATCATGGAAGAGCCTAGCTGATCCATCAAGTGGAGATTTTTCCTTCAGAATGAAACACAGCGAGCTCCAGAACTTTTCCTTTGGAACAAAGGTCAAGGTATATAGAAGTAGGACGTGGAATGGTCTAGTTTTCACTTCATTACCTGTACTGAATCCAAAATTTATTCTTCAAGATAACATGTTTGGGGATGCACACAAGGTATACTACATCATTTCAAATGTGAATCAGTCAAGGCATACTAGAGTTACAATCATTTGGACAGGTGAAATTCAACGCCTTGTATGGATAGAAAGCAGCCAAAGTTGGAACAAATTATGGTATGGACCTAAAGATGAATGTGACAAATATCCTACGTGTGGTCCATATAGTATCTGTACTTCAAGTACTTTCCCAGTATGCAGCTGCATTCAAGGTTTCAATGTAAGAAACCAGGAGGAGTGGAATTTAAGAACTTTTTCTAGTGGGTGTGTGATAAACACAGCACTAGATTGTGGGAATGACAAGTTTCTGCATCTGCAGCATGTGCAACCACCAGAAACAACTATGGTATTTGTGAACAGGAGCATGACCCTTGTAGAATGTGAAGGTATGTGCATGAAGGATTGCTCTTGCACCACTTATGCAAATGTGGAGATTACTAATGGAGGGACTGGTTGTGTGATGTGGACTGATGAGCTCTTAGACACGAGGCAGTTTTCTGATGGTGGCCAAGATCTATATGTCAGATTAGCAGCTTCAGATGTAGAAGTCATTGACACAGGATCTGCAGTTAGCACTCCAAAGGAAAATAATACAGGCAAGGTTGTGGGCATTATTGTTGCTGCAGCTATTGTGTTTTTGGGAATGATTATCGTTTTCTTATGGAAGATGAGAAAATTACCTAGTATTTGGAAATGGAAATGGAAAGCCTCAGAAAAAGGTGCTTTAGAGAGAAATCAGCATCTTCGGGTAATACTTTCAACTATTAGAGATTCCTCAGGTGGAAGGAATATAGATCACCTGCGGTTGCCATTGTTTGATTTCAACACAATAACAATGGCTACTAACAACTTCTCAGAAGCAAATAAACTCGGACAAGGAGGTTTTGGCAGTGTTTACAGGGGTAGGTTGGTTGATGGCCAAGAGATTGCCGTGAAAAGGCTATCAAAAACCTCAGGGCAAGGAAATGAAGAATTCAAGAATGAGGAAAAATCAATTGCTAAACTTCAACATAGGAATCTTGTTCGACTTTTTGGTTGCTGTGTTGAGAAGGAGGAGCAGATGTTGGTCTACGAATACATGGAAAACAACAGCCTAGAATCTATTTTATTTGACAAGGACAAATGTTCCTTACTTGACTGGCAAATGCGCTGCGACATAATATGTAAAATAGCTAGAGGGCTACTTTATCTCCACCATGAATCCAGACTAAGAATTATCCATAGGGATCTCAAGGCAAGTAATATTCTACTTGATAGAGAAATGAACCCAAAGATATCAGATTTTGGAATGGCTAGAATTTTTGGCATTGGTCAAACACAAGCAAATACAAGGAGAGTTGTAAGAACATATGGTTATATGTCTCCTGAATATGCAATGGATGGGCTATTCTCAGTGAAATCTGATGTTTTCAGTTTTGCGATTCTTGTGTTGGAGATAGTAAGTGGCAAGAAGAACAGGGGATTTTATTCCAAAGAAGACATAAATCTTCTTGGGCATGCATGGAGGCTTTGGAAAGAAGGGAGAGCAGTGGAACTAATAGATTCATCATTTGCTAATTTCCATTTAACATCACAAGTTTTGAGATGCATACATGTTGGCCTTGTATGTGTTCAAAATTAA 2343 0.3939 MGASTNSHIYLTFCFSFFSNIVVSLDTVTVIQSLRINQTLVSPKEVFEFGFFSPSSSIWYLGIWYKDIPDKTVVWVANRDTPLQNSNGTLRIGDKGNLVLLDQTRKSVWSPPNQTTGANSVLQILDSGNLILKETNKNDTTNSLWQSFDHPIDTLLPGMKLGLNLDTGVEHRLTSWKSLADPSSGDFSFRMKHSELQNFSFGTKVKVYRSRTWNGLVFTSLPVLNPKFILQDNMFGDAHKVYYIISNVNQSRHTRVTIIWTGEIQRLVWIESSQSWNKLWYGPKDECDKYPTCGPYSICTSSTFPVCSCIQGFNVRNQEEWNLRTFSSGCVINTALDCGNDKFLHLQHVQPPETTMVFVNRSMTLVECEGMCMKDCSCTTYANVEITNGGTGCVMWTDELLDTRQFSDGGQDLYVRLAASDVEVIDTGSAVSTPKENNTGKVVGIIVAAAIVFLGMIIVFLWKMRKLPSIWKWKWKASEKGALERNQHLRVILSTIRDSSGGRNIDHLRLPLFDFNTITMATNNFSEANKLGQGGFGSVYRGRLVDGQEIAVKRLSKTSGQGNEEFKNEEKSIAKLQHRNLVRLFGCCVEKEEQMLVYEYMENNSLESILFDKDKCSLLDWQMRCDIICKIARGLLYLHHESRLRIIHRDLKASNILLDREMNPKISDFGMARIFGIGQTQANTRRVVRTYGYMSPEYAMDGLFSVKSDVFSFAILVLEIVSGKKNRGFYSKEDINLLGHAWRLWKEGRAVELIDSSFANFHLTSQVLRCIHVGLVCVQN* 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1330 780 ProSiteProfiles Protein kinase domain profile. 525 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1330 780 SMART serkin_6 525 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1330 780 Pfam PAN-like domain 338 403 IPR003609 -
Apr1g1330 780 SUPERFAMILY Protein kinase-like (PK-like) 508 771 IPR011009 -
Apr1g1330 780 PIRSF SRK 3 780 IPR024171 GO:0004674
Apr1g1330 780 SMART ntp_6 338 417 IPR003609 -
Apr1g1330 780 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 182 IPR036426 -
Apr1g1330 780 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 11 780 - -
Apr1g1330 780 ProSiteProfiles Bulb-type lectin domain profile. 25 145 IPR001480 -
Apr1g1330 780 Pfam D-mannose binding lectin 72 177 IPR001480 -
Apr1g1330 780 SMART blect_4 31 151 IPR001480 -
Apr1g1330 780 CDD PAN_AP_plant 334 418 - -
Apr1g1330 780 Pfam Protein tyrosine and serine/threonine kinase 528 726 IPR001245 GO:0004672|GO:0006468
Apr1g1330 780 ProSiteProfiles PAN/Apple domain profile. 338 418 IPR003609 -
Apr1g1330 780 Pfam S-locus glycoprotein domain 208 315 IPR000858 GO:0048544
Apr1g1330 780 ProSitePatterns Serine/Threonine protein kinases active-site signature. 646 658 IPR008271 GO:0004672|GO:0006468
Apr1g1330 780 CDD B_lectin 32 151 IPR001480 -
Apr1g1330 780 ProSitePatterns Protein kinases ATP-binding region signature. 531 553 IPR017441 GO:0005524
Apr1g1330 780 Gene3D - 20 148 IPR036426 -
Apr1g1330 780 PANTHER - 11 780 - -
Apr1g1330 780 Gene3D Phosphorylase Kinase; domain 1 502 600 - -
Apr1g1330 780 Gene3D Transferase(Phosphotransferase) domain 1 601 780 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1330 Apr-Chr1 22218493 22230824 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1330 513 779 Receptor kinase-like Gene Family AT4G11530 62.825 2.14e-114 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Apr1g1330 PK_Tyr_Ser-Thr 9.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1330 - - aip:107621503 1115.52