Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1326 ATGGCAGCTGAACTAACGGAGGAGCACTTCAAGTGTCCAATTTCACTACAAGTAATGTCGGACCCTGTTGTCCTCTCTTCCGGTCACACCTTCGACCGTTCTTCCATTCAAAGATGGCTCGACGCAGGTCACAGAACCTGCCCAATTACCAAACTGCCCCTCCCCGACCATGCCTCTGCCTCCCTCATCCCCAACCACGCACTCCGAAGCTTGATTTCCAATTATGCCCCTATCTCCCCTCAAAACTCCAATAATCCACACCCCCACACCCTCACTTCCCCCTCCTCCTCCCTCCCCTCCAATGTCCACGCGCTCCGCCACCTCACGCGCCTTTCACCCCGCGACTCCCTCATCCGCCGCCCTCTCTCTGACTCCGCCCTGGTCCCCGCCCTTCTCACCTGCGTTCACTCCCCCGACGACTCCCTCCGCGAGAAGGCCCTCTCCCTCCTCCTCAATCTCAGCCTCGACGACGACAACAAAGTAGGCCTCGTCGCCGAGGGCGTCATCCCACGCCTCCTCCCCGTCCTCACCGCCGCCTCCTCCGATTGCCGCGCCCTTGCCGCCACCCTCCTCACCAGCCTCGCCGTCGTGGAGGTCAACAAGGCCACCATCGGAGCGTACCCGTGTGCCATTCAAACTCTCGTGTCCCTAGTTCGGGACGGTGAAGGGAGAGAGAAGAAAGAAGCTGCCACCGCGCTTTACGCTCTCTGTTCTTTCTCCGATAACCGGAGAAGAGCGGTGGAGTGCGGGGCCGTTCCCGTTTTGCTTCGGAGTGCGGATTCTGGGCTCGAAAGGAGTGTGGAAGTTATTGGGGTTTTGGCTAAGTGTAAGGAAGGGAGGGAGCAGATGGAGAGGTTTCGTGGGTGTGTGCAGATTCTGGCTCGGGTTTTGAGGAATGGAAGCTCCAGGGGGGTTCAGTATGCTCTCATGGCTCTCTATTCCCTCTGTTGTAACAGTGATGAAACTGTTCTTGAGGCTTTGGAAGCAGGGGTTTTGGAGACTTGTCTCGGGTTGGTGCAGGATCATAATGAGAAAGTGAGAAGGAATTGCTACTGTTTGATTCAGCTTCTCCGTGGCAACAAGCTGAGTTAA 1092 0.5733 MAAELTEEHFKCPISLQVMSDPVVLSSGHTFDRSSIQRWLDAGHRTCPITKLPLPDHASASLIPNHALRSLISNYAPISPQNSNNPHPHTLTSPSSSLPSNVHALRHLTRLSPRDSLIRRPLSDSALVPALLTCVHSPDDSLREKALSLLLNLSLDDDNKVGLVAEGVIPRLLPVLTAASSDCRALAATLLTSLAVVEVNKATIGAYPCAIQTLVSLVRDGEGREKKEAATALYALCSFSDNRRRAVECGAVPVLLRSADSGLERSVEVIGVLAKCKEGREQMERFRGCVQILARVLRNGSSRGVQYALMALYSLCCNSDETVLEALEAGVLETCLGLVQDHNEKVRRNCYCLIQLLRGNKLS* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1326 363 SMART arm_5 319 359 IPR000225 GO:0005515
Apr1g1326 363 SMART arm_5 156 196 IPR000225 GO:0005515
Apr1g1326 363 SMART arm_5 200 238 IPR000225 GO:0005515
Apr1g1326 363 SMART arm_5 276 317 IPR000225 GO:0005515
Apr1g1326 363 SMART arm_5 115 155 IPR000225 GO:0005515
Apr1g1326 363 SUPERFAMILY ARM repeat 101 357 IPR016024 -
Apr1g1326 363 Pfam U-box domain 8 75 IPR003613 GO:0004842|GO:0016567
Apr1g1326 363 Gene3D - 266 358 IPR011989 -
Apr1g1326 363 Gene3D - 205 265 IPR011989 -
Apr1g1326 363 Gene3D - 88 204 IPR011989 -
Apr1g1326 363 PANTHER U BOX DOMAIN-CONTAINING 4 361 - -
Apr1g1326 363 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Apr1g1326 363 MobiDBLite consensus disorder prediction 78 99 - -
Apr1g1326 363 CDD RING-Ubox_PUB 10 51 IPR045210 -
Apr1g1326 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 77 IPR013083 -
Apr1g1326 363 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 126 168 IPR000225 GO:0005515
Apr1g1326 363 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 361 - -
Apr1g1326 363 SUPERFAMILY RING/U-box 8 75 - -
Apr1g1326 363 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1326 Apr-Chr1 22194589 22196551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1326 1 363 U-box Gene Family AT4G21350 57.447 3.10e-137 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1326 - - gmx:100796272 494.197