Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1324 ATGGCTGAGGAGTTTCAAGCTGCTGCGGTTTGTGGTGAAAATTGGTGGAATATTAATTCAGCAAGAAGTGTATTCCCTCTGATGATGAGTTCATCATCAACCTGTTCCGTGGCTGCAGCTGATGCTGGTAACTACAGCACCTGGCAAACTGATTTCATGGATTTGAAAGGAGCAAGTAACAACTTGGTTTCGGATAGTTTTTTGGGTTTTCTCGATGCTGAGAAGGCACAGAAGAGTGACTCGGCTAGTGGAACTGGTAGCATCTTGATCGATTCCCCCTTGCAAATGATGGGTTTTGGCATGTCATCTTCTACTTCATCGAATTGGAATCAATCTCTGTTAAGGCAAGAGAGCAGTTTCCATTCTGTATTTCAAGAAGAAACAGGCATGGGTGGTAATAATTCACAAATCCAAAATGATTGGAGCCCAAAGAATTTCTCATCTGATGGTGGAAGCCAAGTGTCAACCGTTGATGCTTACAAGCCAATGAACCAAGAGTTTTCCTTGGATCAGCAAAGTCTGAATTCTGTTACCAGCACTGGATTATCTGGTGGTTTCCCAGTTGGGTCTGCTTCCTATGGTTACCCCTCAACATTGATACAAAGCTTATTTGACCCTAAGCCTCAGCCACAACCACAGAACTCCCTTTTCACCAACCCCACCATGTCCTATTCATCTACAACAAACTATGGGACATGTTCCAATGAACCATCACCAACATGGTCCAAAGTCTCTTCCCTTCTGAAACCCTCAATGCCAAAGCAGCAACTTAGTGGATTGCACTTTTCGAACAATACTCCTTTCTGGAATGCTTCAGCTGAGGCACTCAATGACTTAAGAGCAGGTGTTTTTGCTTCATCACAAGCACAATATCAGACGCCAAAATTTGAAGAGAAACCCAATTGCCCAAATACTCAATTAAACAAGCTCAAAAGAGAAGAATCTCCAGACACAACATCAGCAACGAAGAAAAATTCTTCTGAACCTGCCTTCAAGAGGCCAAGAATTGAGACTCCGTCCCCATTACCAACTTTTAAGGTTCGGAAGGAAAAGCTGGGGGACCGCATCACTGCTCTTCAGCAATTGGTTTCACCTTTCGGAAAGACGGACACGGCATCAGTTCTTCACGAAGCCATCGAGTACATCAAGTTCCTTCATGACCAAGTCAGTGTTTTGAGCACTCCATATATGAAAAATGGGGCTCCCGTTCAACAGCAGCAGGGTTGTGATAATCTGATGGACTCGGAAGGGCCTAGACAAGATCTGAGAAGCCGAGGGCTGTGTTTGGTACCGATTTCAAGCACTTTCCCGGTGGCTAATGAGACCACTGTTGATTTCTGGACACCTACATTCGGGGGCACACTCATTGGCCGGTAG 1377 0.4488 MAEEFQAAAVCGENWWNINSARSVFPLMMSSSSTCSVAAADAGNYSTWQTDFMDLKGASNNLVSDSFLGFLDAEKAQKSDSASGTGSILIDSPLQMMGFGMSSSTSSNWNQSLLRQESSFHSVFQEETGMGGNNSQIQNDWSPKNFSSDGGSQVSTVDAYKPMNQEFSLDQQSLNSVTSTGLSGGFPVGSASYGYPSTLIQSLFDPKPQPQPQNSLFTNPTMSYSSTTNYGTCSNEPSPTWSKVSSLLKPSMPKQQLSGLHFSNNTPFWNASAEALNDLRAGVFASSQAQYQTPKFEEKPNCPNTQLNKLKREESPDTTSATKKNSSEPAFKRPRIETPSPLPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVSVLSTPYMKNGAPVQQQQGCDNLMDSEGPRQDLRSRGLCLVPISSTFPVANETTVDFWTPTFGGTLIGR* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1324 458 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 336 385 IPR011598 GO:0046983
Apr1g1324 458 PANTHER TRANSCRIPTION FACTOR BHLH123 45 446 - -
Apr1g1324 458 CDD bHLH_AtbHLH_like 342 393 IPR045239 -
Apr1g1324 458 MobiDBLite consensus disorder prediction 292 342 - -
Apr1g1324 458 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 45 446 - -
Apr1g1324 458 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 346 402 IPR036638 GO:0046983
Apr1g1324 458 Gene3D - 346 407 IPR036638 GO:0046983
Apr1g1324 458 MobiDBLite consensus disorder prediction 292 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1324 Apr-Chr1 22173229 22176129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1324 1 453 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G61660 40.171 3.58e-74 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1324 - - gmx:100794682 671.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1324 1 22173229 22176129 Apr1g1324 1 22173229 22176129 ECH
Apr3g1899 3 35030566 35033974 Apr1g1324 1 22173229 22176129 PCT