Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1320 ATGAGTAGGAAGAAGAACTATGATGATGACACAAAAGAGTACAAATCCAAGAATCTTGAGACTGAAAGGAGGAGGAGGGAAAGGCTAAGTAGCAGGCTCTTGATGCTGCGCTCTTTAGTACCTATCATCACAAATATGAATAAAGCAACAATTATTGAAGATGCTATCACCTACATCATGAAGCTGCAAGACAAAGTCCATAGTCTCAGTCAAGAGCTTCACCAAATGGAAGCAACCTCGAAGGAAACAGCAGAGACAAAAATGGATGAAATTGATGCTGTTGATGATATGAAAAATTGGGGGATACAGGCAGAGGTTAGAGTGGCACACATAGATGTGAATAAACTCTGGGTCAAGATCATCATTGAGAAGAAGCGGGGAAGATTCAAGAAATTGATGGAGGCCCTGAACAATTTCGGCATTGAGTTTATAGAAACCAATCTCACAACCATAAAAGGAGCTGTTCTGATTACCAGCTGCATACAGGTGATTCTGTGA 498 0.4076 MSRKKNYDDDTKEYKSKNLETERRRRERLSSRLLMLRSLVPIITNMNKATIIEDAITYIMKLQDKVHSLSQELHQMEATSKETAETKMDEIDAVDDMKNWGIQAEVRVAHIDVNKLWVKIIIEKKRGRFKKLMEALNNFGIEFIETNLTTIKGAVLITSCIQVIL* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1320 165 Coils Coil 59 79 - -
Apr1g1320 165 Gene3D - 4 79 IPR036638 GO:0046983
Apr1g1320 165 Pfam Helix-loop-helix DNA-binding domain 16 63 IPR011598 GO:0046983
Apr1g1320 165 PANTHER TRANSCRIPTION FACTOR DYT1 5 163 - -
Apr1g1320 165 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 13 62 IPR011598 GO:0046983
Apr1g1320 165 SMART finulus 19 68 IPR011598 GO:0046983
Apr1g1320 165 MobiDBLite consensus disorder prediction 1 23 - -
Apr1g1320 165 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 5 163 - -
Apr1g1320 165 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 12 79 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1320 Apr-Chr1 22134720 22135573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1320 1 162 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G21330 45.087 8.51e-45 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr1g1320 HLH 4.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1320 - - aprc:113853209 302.367