Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1309 ATGTCCCACTATGAGTCTCTTGTATCAAAGACCACTCTCACCTTCATTCATGTATTTTTCTCTCCATACATTATAGTATTAATCATATCTTTTCTTCTCAACTCCGACATACCCTTTAGGCCGGAGATGGGCGATAGCAATTGGGTGTTGGATTATGGTGATCTTGATGACATTCCCCTCCCTACCCTTCACCCACCAAATTTCACTTGGTCCTCCTCTCCTCCTCACACCCTCAGTGTGGAGCTAGATGAGTCATTTAGAAATTTGGATGGTTTCAAGGAAACTGGGTCAAGAAAACGTTTGAGTTCAGGATGGTGCAATCCATCTGCTTCCAAAGCATGCAGAGAGAAAATGCGAAGGGATCGACTGAACGACAGGTTTTTGGAATTGGGCTCTATTTTGGACCCTGCGAGGCCTCTGAAAATGGACAAGGCTGTTATATTAAGTGATGCTGTTCGAATGGTGTTTCAGTTACGAGAGGAAGCTCAGAAGCTTAGAGACTCTACCCACAATCTACAGGACAAAATCAACCAATTGAAGGCTGAGAAAAATGAGCTTCGTGATGAGAAGCAGCGACTAAAAGCAGAGAAAGAGAGCATTGAGCAGAAGCTTAAAGCATTGAGTTCACAACCTAGCCTTTTGCCTGCGTTTCCTGCACAAGGACAAGCTGTTGGCAGCAAGGTGGTGCCATTCATGGGCTACCCAGGAGTTGCCATGTGGCAGTTTTTACAACCTGCTGCTGTTGATACCTCACAGGACCATCTACTTAGGCCCCCAGTTGCATAA 786 0.4529 MSHYESLVSKTTLTFIHVFFSPYIIVLIISFLLNSDIPFRPEMGDSNWVLDYGDLDDIPLPTLHPPNFTWSSSPPHTLSVELDESFRNLDGFKETGSRKRLSSGWCNPSASKACREKMRRDRLNDRFLELGSILDPARPLKMDKAVILSDAVRMVFQLREEAQKLRDSTHNLQDKINQLKAEKNELRDEKQRLKAEKESIEQKLKALSSQPSLLPAFPAQGQAVGSKVVPFMGYPGVAMWQFLQPAAVDTSQDHLLRPPVA* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1309 261 Pfam Helix-loop-helix DNA-binding domain 111 158 IPR011598 GO:0046983
Apr1g1309 261 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 111 178 IPR036638 GO:0046983
Apr1g1309 261 PANTHER BHLH TRANSCRIPTION FACTOR 44 261 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Apr1g1309 261 Coils Coil 155 210 - -
Apr1g1309 261 CDD bHLH_AtILR3_like 112 187 - -
Apr1g1309 261 Gene3D - 109 188 IPR036638 GO:0046983
Apr1g1309 261 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 107 158 IPR011598 GO:0046983
Apr1g1309 261 SMART finulus 113 164 IPR011598 GO:0046983
Apr1g1309 261 PANTHER TRANSCRIPTION FACTOR ILR3-LIKE 44 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1309 Apr-Chr1 22018271 22021603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1309 45 261 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 56.957 1.20e-82 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr1g1309 HLH 1.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1309 - - gmx:100790993 328.561