Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1294 ATGTTCGCCGGAGGAATTTTCCGACATGGCTTTCTCACTGCTCTGCTCTTCCTCTGCCTCGTTACTTCCTCCCTATCAGAAGAGCTTCAATCACTCATGAAGCTGAAGTCGTTTCTCCAAAGTTCAAATGAAAGCGTTTTCAGTTCTTGGACAGAAGCAAATTCTCCATGCCACTTCACCGGGATTGTGTGCAATTCCAATGGTTTTGTTTCAGAAATCAACCTTGCACAGAAACAACTAGTGGGTACTCTCCCTTTTGATTCAATATGTAAGCTTCAATCGCTTGAGAAGATCTCTTTGGGGTCCAACAACTTGCATGGAAGCATTAGTGAGGAGTTGGTGAATTGCACAAACTTGAAGCACTTGGATTTGGGTGTGAATTCGTTCAATGGACCAGTGCCTGATTTGTCACCTTTGAACAAGTTAGAGTACTTGAATTTAAATGCTAGTGGAATTTCTGGGTCATTTCCATGGAAGTCGTTGGAAAATCTAACTAGTCTTACATTCCTAAGCCTAGGAGATAACATATTGGATAAATCTCCTTTCCCTTTGGAGGTCTTAAGGCTTGAAAAATTGTATTGGCTTTACCTCACAAATTGTAGCATCACAGGAAATATTCCATTGGGTATTGGGAATCTCACTCAGCTTATTAATCTTGAACTTTCTGACAACTATTTATCTGGTGAGATTCCAGCTGATATTGGAAAGCTTCAGAGGCTATGGCAACTTGAGCTATATGATAACAGTTTGAGTGGGAAAATTCCAGTGGGATTTGGTAACCTTACCAATCTTGTTAACTTTGATGCTTCAAGTAACCAACTTGAAGGAGATCTTTCTGAGCTAAGGTCCTTGACGAGCCTTGCATCCCTTCAGCTTTTTTGGAACCACTTCTCTGGAGAAATTCCAAAAGAGCTTGGAGATATCAAAAACCTCACAGAACTTTCTCTTTATGGTAACAATCTCACTGGTCCTCTTCCTCAAAAACTAGGATCCTGGATAGGCATGGAATTCATTGATGTTTCAGACAATTCTCTTTCTGGTCCTATACCACCTTACATGTGCAAGAACAACCAAATCACTGACCTAGCCCTGATGAACAACAGCTTCAACGGGACTATACCAGAGACTTATGCAAGTTGCACGTCTTTGCTTCGTTTTCCCCTAAGTAGGAACTCACTCTCGGGTGTTGTTCCCTCAGGTATATGGGGCTTGCCAAATCTGGAACTGCTTGATCTTAGTATGAACAGTTTTGAAGGTCCAGTGACATCTGATATTGCCAAAGCAAAATCTCTAGCACAGCTGTTTTTATCTGAGAATCGGTTCTCGGGTGAGTTACCAGTGGAAATCTCAGAAGCTGTTTCATTGGTATCAATTCAACTGAGTTCAAATCAAATTTCTGGTCACATCCCAGAAACCATTGGCCAGTTGAAGAAACTAACTAGTCTTACTTTGAATGAGAACAATCTTTCTGGTATTATACCAGATTCTATTGGTTCATGTACTTCTCTTAATCAAATAAACCTTGCTGGTAACTCTTTTTCTGGCTCAATACCAGCTAGTATTGGTTCTCTTCCTACCATCAATTCATTGAACTTGTCCTCAAACAGGCTTTCTGGTGAAATTCCACCAACTTTATCATCTCTCAGACTTAGCCTTCTTGATTTGTCAAACAACCAGTTGTTTGGTTCCATACCAGAATCACTGGCTATTTCTGCCTTCAAAGACGGGTTCAAGGGAAACCCTGGCTTATGCAGCCAGACTTTGAAAAATGTTAGGTCATGTTCATTGGAATCCAGCAGCACCAGGAGACTCAAAAACTTTGTAGTCTGTTTCATTTCTGTTTTAGTGATTCTGCTTGTTGCTTCATGCTTCCTCTTCACTAAACTGAGGCAGAACAAGTTTAAGAAGCCACTGAAGACTAATTCTTGGAATGTGAAGCAATACCATGTGATAAACTTCAGTGAGAATGAAATCATTGATGATATCAAGGCTGAAAATTTGATTGGCAAAGGAGGATCAGGGAATGTTTACAAGGTTGTGCTTAAAAGTGGGGAAGAATTTGCTGTCAAACACATATGGACTTCTAATCCAAGTGACCAAGGAAGTTTCAGGAGCACCTCAGCTATGTTAAGAAGGGGTTCCATCTCACCTGAGTATGATGCAGAAGTGGCCACTTTGAGTTCTATAAGGCATGTGAACGTGGTGAAGCTCTATTGTAGCATCACAAGTGAAGATAGTAGTTTGCTTGTTTATGAGTTCTTACCAAATGGGAGCTTGTGGGACAGGTTGCACACCTGTAAGAAGACTCAAATGGGGTGGGAAGTTCGGTATGACATTGCAATGGGTGCTGCTAGAGGATTGGAGTACCTACATCATGGGTGTGATAGACCTGTTATACATAGGGATGTCAAATCCAGTAACATATTGCTTGATGAGGAATGGAAACCAAGGATTGCTGATTTTGGACTTGCCAGGATTGTGCAGGGAGAAGCAGGCAATTGGACACATGTCATTGCAGGAACACTAGGATACATGCCTCCTGAGTATGCCTACACATGTAAGGTGACAGAGAAGAGTGATGTTTACAGCTTTGGGGTAGTCCTGATGGAGTTGGTAACAGGGAAGAGGCCTATAGAGCCAGAGTTTGGAGAGAATAAGGACATTGTGTTTTGGGTATGCAGCAATATTAGGAGCAAAGAAAATGCACTAGAACTGGTGGATCCTGCCCTTGCAAAGCATTTCAAAGAAGATGCCATGAAGGTGTTGAGAATAGCAACATTATGCACTGCCAAAATTCCAGCTTCTAGACCCTCAATGAGAATGTTGGTTCAAATGCTGGAAGATGCAGACCCTTTCACCACAGCCAAAATGATTGTGACCATAGATGGTTGA 2892 0.4156 MFAGGIFRHGFLTALLFLCLVTSSLSEELQSLMKLKSFLQSSNESVFSSWTEANSPCHFTGIVCNSNGFVSEINLAQKQLVGTLPFDSICKLQSLEKISLGSNNLHGSISEELVNCTNLKHLDLGVNSFNGPVPDLSPLNKLEYLNLNASGISGSFPWKSLENLTSLTFLSLGDNILDKSPFPLEVLRLEKLYWLYLTNCSITGNIPLGIGNLTQLINLELSDNYLSGEIPADIGKLQRLWQLELYDNSLSGKIPVGFGNLTNLVNFDASSNQLEGDLSELRSLTSLASLQLFWNHFSGEIPKELGDIKNLTELSLYGNNLTGPLPQKLGSWIGMEFIDVSDNSLSGPIPPYMCKNNQITDLALMNNSFNGTIPETYASCTSLLRFPLSRNSLSGVVPSGIWGLPNLELLDLSMNSFEGPVTSDIAKAKSLAQLFLSENRFSGELPVEISEAVSLVSIQLSSNQISGHIPETIGQLKKLTSLTLNENNLSGIIPDSIGSCTSLNQINLAGNSFSGSIPASIGSLPTINSLNLSSNRLSGEIPPTLSSLRLSLLDLSNNQLFGSIPESLAISAFKDGFKGNPGLCSQTLKNVRSCSLESSSTRRLKNFVVCFISVLVILLVASCFLFTKLRQNKFKKPLKTNSWNVKQYHVINFSENEIIDDIKAENLIGKGGSGNVYKVVLKSGEEFAVKHIWTSNPSDQGSFRSTSAMLRRGSISPEYDAEVATLSSIRHVNVVKLYCSITSEDSSLLVYEFLPNGSLWDRLHTCKKTQMGWEVRYDIAMGAARGLEYLHHGCDRPVIHRDVKSSNILLDEEWKPRIADFGLARIVQGEAGNWTHVIAGTLGYMPPEYAYTCKVTEKSDVYSFGVVLMELVTGKRPIEPEFGENKDIVFWVCSNIRSKENALELVDPALAKHFKEDAMKVLRIATLCTAKIPASRPSMRMLVQMLEDADPFTTAKMIVTIDG* 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1294 963 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Apr1g1294 963 SUPERFAMILY L domain-like 187 420 - -
Apr1g1294 963 Gene3D Phosphorylase Kinase; domain 1 645 753 - -
Apr1g1294 963 Gene3D Ribonuclease Inhibitor 139 351 IPR032675 -
Apr1g1294 963 ProSitePatterns Protein kinases ATP-binding region signature. 668 690 IPR017441 GO:0005524
Apr1g1294 963 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 9 956 - -
Apr1g1294 963 SMART serkin_6 662 953 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1294 963 SUPERFAMILY L domain-like 23 255 - -
Apr1g1294 963 ProSiteProfiles Protein kinase domain profile. 662 953 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1294 963 CDD STKc_IRAK 668 947 - -
Apr1g1294 963 SUPERFAMILY RNI-like 324 628 - -
Apr1g1294 963 Gene3D Ribonuclease Inhibitor 27 138 IPR032675 -
Apr1g1294 963 Gene3D Ribonuclease Inhibitor 352 603 IPR032675 -
Apr1g1294 963 Pfam Leucine rich repeat 454 512 IPR001611 GO:0005515
Apr1g1294 963 Pfam Leucine rich repeat 359 416 IPR001611 GO:0005515
Apr1g1294 963 PANTHER RECEPTOR-LIKE PROTEIN KINASE HAIKU2 9 956 - -
Apr1g1294 963 Gene3D Transferase(Phosphotransferase) domain 1 754 958 - -
Apr1g1294 963 SUPERFAMILY Protein kinase-like (PK-like) 642 947 IPR011009 -
Apr1g1294 963 Pfam Protein kinase domain 665 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1294 963 ProSitePatterns Serine/Threonine protein kinases active-site signature. 798 810 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1294 Apr-Chr1 21872953 21876468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1294 7 960 Receptor kinase-like Gene Family AT1G09970 57.900 0.0 1074
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Apr1g1294 Pkinase 1.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1294 - - ccaj:109814095 1600.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1294 1 21872953 21876468 Apr1g1294 1 21872953 21876468 ECH