Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1292 ATGGAGATTTCATCAATCAGAGGGTTATCTGAACTGGGTATAATAGAGGATCCTAGTTTTCTCCACCAGTGGAACTTAAACCCTATTGATACAACTAGCTTAACAGGTGCTGCTTTTGGAGAGATTTTACAAAAGCATTCAGTCTCTGATAACCCAAACTTCAATTCCAAAACATCCATGGAAACTTCAAGTGGAATTGAAAGACCTACAAAACAGCTCAAAAACAACAGCTGGAGTCACAGCAAAAGTCAACAGTCATCAGAAACACAATTTGCTTCTTGCTCAAATCTTCTTTCATTTGTTGATTCTAATTACACAAGTGAATTGGGACTGGTGAAGCCTAAGGTGGAGATGGTGTGTCCTAAAATCAATAACAATACTCTTGCAGACATGTTGATCTCTCAGGGAACCTTGGGGAATCAAAACTATGCCTTCAAGGCTTGCCAAGAGGCCAAAAAGATTGAGACACGTCCTAAAGTTTCTCAACCTCATGACCATATAATAGCTGAAAGGAAGCGGCGAGAGAAGCTCAGCCAGCGGTTCATTGCTCTATCAGCTCTTGTTCCTGGCCTAAAAAAGATGGACAAAGCTTCTGTTCTTGGAGAAGCTATAAGGTACTTGAAACAAATGCAAGAGAAAGTGAGTGCTCTTGAGGAGGAACAGAACAGGAAGAAAACTGTGCAATCTGTGGTAATTGTGAAGAAATCCCAACTATCTAATGATTCTGAAGACTCTTCTTCTTCAGACACTGGTGGTAATACATTGAATGAGGCTCTACCGGAAATTGAAGCACGATTTTGTGAAAGAAATGTCCTCATAAGAGTACATTGTGAGAAGAATAAAGGAGTTATAGAGAAAACAATCAGCGAAATTGAGAAACTCCATCTAAAAGTCATCAATAGCAGTGCCTTGACATTTGGTAGTTTCGCCCTGGATATAACTATTATTGCTCAGATGGATATGGAATTTGGCATGACAGTGAAGGATCTTGTGAGAAGTTTACGCTCAGCTTTTTCACCTTTCATGTGA 1029 0.3975 MEISSIRGLSELGIIEDPSFLHQWNLNPIDTTSLTGAAFGEILQKHSVSDNPNFNSKTSMETSSGIERPTKQLKNNSWSHSKSQQSSETQFASCSNLLSFVDSNYTSELGLVKPKVEMVCPKINNNTLADMLISQGTLGNQNYAFKACQEAKKIETRPKVSQPHDHIIAERKRREKLSQRFIALSALVPGLKKMDKASVLGEAIRYLKQMQEKVSALEEEQNRKKTVQSVVIVKKSQLSNDSEDSSSSDTGGNTLNEALPEIEARFCERNVLIRVHCEKNKGVIEKTISEIEKLHLKVINSSALTFGSFALDITIIAQMDMEFGMTVKDLVRSLRSAFSPFM* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1292 342 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 239 IPR036638 GO:0046983
Apr1g1292 342 Pfam Helix-loop-helix DNA-binding domain 166 211 IPR011598 GO:0046983
Apr1g1292 342 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 2 341 - -
Apr1g1292 342 Gene3D - 160 234 IPR036638 GO:0046983
Apr1g1292 342 SMART finulus 167 216 IPR011598 GO:0046983
Apr1g1292 342 PANTHER BHLH TRANSCRIPTION FACTOR 2 341 - -
Apr1g1292 342 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 161 210 IPR011598 GO:0046983
Apr1g1292 342 MobiDBLite consensus disorder prediction 50 84 - -
Apr1g1292 342 Coils Coil 200 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1292 Apr-Chr1 21847877 21850497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1292 1 342 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 39.722 4.51e-63 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr1g1292 HLH 4.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1292 - - aprc:113852973 631.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1292 1 21847877 21850497 Apr1g1292 1 21847877 21850497 ECH
Apr3g1931 3 35314969 35317280 Apr1g1292 1 21847877 21850497 PCT