Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1283 ATGGAAAACTATTCATACCAATCATACCCAGACTCAGGCGAGTCCTCTCCACGCTCTAGAGAGATCGACTTCGAAAACCCTCCACCATGGGACGATCAAAACTACAAAGCAAAGTTCATGTGCAGCTACGGCGGAAAGATCCAACCACGCTCCCACGACAACCAACTCTCCTACGTCGCCGGCGAAACCAAAATTCTCGCCGTCGATCGCAACATCAAGTTCGCCACCATGCTCTCCAAACTCGCCGCTCTCTGCGACGCCACTCCCCAAGACCTCACCTTCAAGTACCAGCTCCCTGGTGAAGACCTCGACGCTCTCATCTCCGTCACCAACGACGACGACCTTGACCACATGATGCACGAGTACGATCGTCTCTACCGCGCTTCCGCTAGACCCGCCCGCATGCGATTATTTCTCTTTCTCAACGATGCTCTCTCTTCTCCTCCATCTTCTGCCACACCCGACCCGGTTAAACCCAACAACGTCGATTTTCTCTTTGGTTTAGACAAGAGCGTCGCCGCGGCTGCTCCGCCGCCTCAGCCTCCGCCGCAGGCTGTCAAATTTCATGATCCGGTGCCGGAAACCGTGCCGCCGCTGCCGGAGTACCAGTCACGGGTGAACCCTGCTGATCGGGTCACGGGTTCGGATCCGAACGTGAACCACCCTCTCGAGATTCAGAGGCAGTTGCAGCAGGAGTTGCAGCGGTTGCAACTTGCGGAAAACGAGCAAGTTGCGTATCGGAGGAAGAGTGAAAACGGTGTCGTCGGAAATTATCCCGCTGGAGATTATTACGTTCAGAAGATGCCTGAGAAATTTCCCCCGTCGAGTTTTCCGGCCAGCGCGCCGCCACCGTATTGGCCTGAAAAGCATGTTTCCGGCGAGGGTTATCCGCCGGCGGTGTCGGCTGCTTCCGGAGGAGGGGAGCCGCCGGTTTACATGATTCCTGCGCCGGGAACGTTCTATCATGCGCCGGTGGTGCGTCCCGCGGCCACTCAGGGGTATTACACGGTGCAACGAATGCCTTCTGATGCTTACCGTGAAGCGCCGATGTACGGTGGCGTGCCACCCCCTAAAGCGCCGTTTTCGTCGGCCGTTCCGGCGAGCTTTGCACCGGCGCAGCCGGTTAAGGCTCCCGCGTATACAGAAGGGTTCAGTGTGGTTCGGTCAGCTGGGATACCGGATAATACATCCTCTCCATATGCGCAGGTGGCGTACGATAGTGCAACTGGGAGACAGGTTTACTATACTGCGCCGGGCGGCGTAGTGCACGCTCCGCCGTACCAAGGGGTTGTTCAGCCCGTCACCGCGGATATGAGACCCGCTGGGGTGCCGTTGGGTCAGGATGGTAAAGGCATAAGCAAGGTTACTCAAGGTTCAGTGTGA 1383 0.5741 MENYSYQSYPDSGESSPRSREIDFENPPPWDDQNYKAKFMCSYGGKIQPRSHDNQLSYVAGETKILAVDRNIKFATMLSKLAALCDATPQDLTFKYQLPGEDLDALISVTNDDDLDHMMHEYDRLYRASARPARMRLFLFLNDALSSPPSSATPDPVKPNNVDFLFGLDKSVAAAAPPPQPPPQAVKFHDPVPETVPPLPEYQSRVNPADRVTGSDPNVNHPLEIQRQLQQELQRLQLAENEQVAYRRKSENGVVGNYPAGDYYVQKMPEKFPPSSFPASAPPPYWPEKHVSGEGYPPAVSAASGGGEPPVYMIPAPGTFYHAPVVRPAATQGYYTVQRMPSDAYREAPMYGGVPPPKAPFSSAVPASFAPAQPVKAPAYTEGFSVVRSAGIPDNTSSPYAQVAYDSATGRQVYYTAPGGVVHAPPYQGVVQPVTADMRPAGVPLGQDGKGISKVTQGSV* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1283 460 PANTHER OS05G0427100 PROTEIN-RELATED 1 452 - -
Apr1g1283 460 Pfam PB1 domain 52 140 IPR000270 GO:0005515
Apr1g1283 460 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P (PB1) DOMAIN PROTEIN 1 452 - -
Apr1g1283 460 MobiDBLite consensus disorder prediction 1 15 - -
Apr1g1283 460 MobiDBLite consensus disorder prediction 1 31 - -
Apr1g1283 460 SUPERFAMILY CAD & PB1 domains 52 144 - -
Apr1g1283 460 CDD PB1_UP2 40 140 - -
Apr1g1283 460 Coils Coil 229 249 - -
Apr1g1283 460 Gene3D - 57 143 - -
Apr1g1283 460 SMART PB1_new 51 142 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1283 Apr-Chr1 21748364 21750175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1283 31 140 MAP Kinase Kinase Kinase AT5G57610 46.364 2.85e-26 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1283 - - gmx:100780332 639.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1283 1 21748364 21750175 Apr1g1283 1 21748364 21750175 ECH
Apr3g1940 3 35419484 35421369 Apr1g1283 1 21748364 21750175 PCT