Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1276 ATGGGAAGAGGAAAAATTGCGATCCGAAGGATCGATAACTCCACTAGCCGGCAAGTGACTTTCTCAAAGAGAAGAAATGGATTGCTGAAGAAAGCTAGAGAATTATCCATTCTCTGTGATGCAGAAGTTGGGTTGATTGTGTTCTCTAGCACTGGCAAGCTTCATGACTATGCAAGCACAAGCATGAAATCTGTTATTGAGCGCTTTAACAAGCTGAAAGAGGAACAACATCAGCTCATGAATCCTGCTTCAGAAGTCAAGTTTTGGCAGACAGAAGCAGCAAGCTTGAGGCAACAACTGCAGTATTTGCAAGAATGCCACAGGCAATTGATGGGTGAAGAACTTTCTGGTTTGGGTATTAAAGAACTACAAAATCTAGAAAACCAACTGGAGATGAGTTTAAAGGGTGTTCGCATGAAAAAGGTATGA 429 0.4172 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGLIVFSSTGKLHDYASTSMKSVIERFNKLKEEQHQLMNPASEVKFWQTEAASLRQQLQYLQECHRQLMGEELSGLGIKELQNLENQLEMSLKGVRMKKV* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1276 142 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Apr1g1276 142 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Apr1g1276 142 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Apr1g1276 142 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Apr1g1276 142 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Apr1g1276 142 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 141 - -
Apr1g1276 142 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Apr1g1276 142 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Apr1g1276 142 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Apr1g1276 142 ProSiteProfiles K-box domain profile. 86 142 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr1g1276 142 Coils Coil 120 140 - -
Apr1g1276 142 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Apr1g1276 142 Pfam K-box region 84 141 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr1g1276 142 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Apr1g1276 142 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1276 Apr-Chr1 21593072 21611389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1276 1 141 MADS-box Gene Family AT4G37940 74.468 1.06e-76 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Apr1g1276 K-box 8.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1276 K09264 - gmx:100805092 262.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1943 3 35459436 35473348 Apr1g1276 1 21593072 21611389 PCT