Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1275 ATGGCTAATTGGCATATTGGTAATGATATTAGCACAACAACTCGTATGTTGTGCTATGCAATGGTAACCCTTTTATTCCTGCCTCATACAAATCCACAATCATTCAGCTATAACTCCTTTGCTAAAGGTGATCTACAGCTGAAACTGGAAGGAGATGCAGAAGTTTCACGTTCAGAAATACGAGTAACTCTGAGCAGTGTAGGACAAAGCAACAGTTACAGTGTTGGAAGAGTCACACGTCTTCAAAAGATGCACCTATGGGATATGAACTCTAGAAAACTCACTGACTTCACAACCAAATTTTCATTTGTTGTTTTCTCAAATGACAATCCTTACGGAGATGGGTTGGCATTCTTTTTGGCAGATCCAATGCTTCCTCTTTTAACTGACATTGTAGAAGGAGGTGGTCTTGGCCTTGTGGATGGTAAACAAGTGTTGAACTCAACACCCTACTCATTTGTGGCTGTGGAGTTTGACACCTTCAAGAATTCATGGGACCCTGACAACCCTCATGTAGGTGTGAATTTCAACTCTATGATGTCTAATATAACTGCTCCATGGTTGATTGATATGCCAGCAAATAAAGTTTATGATTGTAGCATTGATTACAACTCCTCCACCTATAATTTAAGGGTGTCTTTCACTGGCTACCATGACAGCACTGGTGCTGTAGTAGAAAACAGCATTTCATACAAGGTTGATTTGAGAGATCATTTACCTGAGTGGGTTATGTTTGGCTTCTCAGCCGCCACGGGTAGTTCTTTTGAGGTGCATGTTCTAAAGTCATGGTCATTTAGTTCAAGCTTACAACTCAGTGATGCTACTGGTGGTAATAAACTGGCTGTGGGACTAGGAATTGGGATTGGTTTGTTTGTGATTTTGCTAGTATTGGCTGGTTTTTTATTGTGGAAAAGGACTAGAGGAATTACGGAAGAAGTCTTAGAATGTGATCTAAACATGGATGATGAATTCCAAAAGGGAATTGGGCCCAAGAGGTTTTGCTACAATGAATTGGAAAGTGCAACAAGTAAATTTTCTGAGTCTGAGAAGCTTGGACAAGGTGGTTTTGGTGATGTCTATAAAGGTTTTTTGAAAGACTTGAACTCTTATGTTGCTATCAAGAGGATATCGAAAGAGTCTAGGCAAGGGATTAAGGAATATGCAACTGAAGTTAAGATCATTAGCCAATTGAGGCACAAGAATTTGGTACAGCTCCTTGGTTGGTGCCATAAGAAAAATGATCTCATCCTTGTATATGAATTCATGACAAATGGTAGCTTAGATTCTCATTTATATGGAGGAAAAGGCTTCTTGACATGGCCAGTAAGGTACAACATAGCTCTAGGCTTGGCTTCAGCAATGCTGTACCTGCAAGAAGAATGGGAACAATGTGTTCTTCATAGGGATATTAAATCAAGCAACATAATGTTGGATTCAAGTTTCAATGCTAAGCTTGGTGATTTTGGTTTAGCTAGGTTGGTGGATCATGAAAAAGGGTCACAAACCACACTTATAGCTGGGACCAAGGGGTACATTGCACCAGAATATGTCATTACAGGCAAAGCTTATAAGGAATCTGACATATACAGCTTTGGGATTGTTCTATTGGAGATAGCAAGTGGAAGAAAACCCGTTGACCTTAAAGCCAAGGAGGGTCAAATAACCATAGTTGAGTGGGTTTGGGAGCTCTATGAATTGGGAGAGCTATTTAAAGTAGCAGATCCAAGGCTATGTGGAGCATTTGATGAGGAACAAATGGAACGGTTAGCAGTTATAGGCCTTTGGTGTGCTTTCCCAAATTATAGAATCAGGCCTTCTATGATGCAAGTGATCCAAGTGCTCAAATTTGAAGCTCAATTGCCTATTCTGCCGAAGTGGATGCCTGTGACAACTTGTTATCCTTTGACAATCACAACTTTTTCATCAGTTTAA 1932 0.4006 MANWHIGNDISTTTRMLCYAMVTLLFLPHTNPQSFSYNSFAKGDLQLKLEGDAEVSRSEIRVTLSSVGQSNSYSVGRVTRLQKMHLWDMNSRKLTDFTTKFSFVVFSNDNPYGDGLAFFLADPMLPLLTDIVEGGGLGLVDGKQVLNSTPYSFVAVEFDTFKNSWDPDNPHVGVNFNSMMSNITAPWLIDMPANKVYDCSIDYNSSTYNLRVSFTGYHDSTGAVVENSISYKVDLRDHLPEWVMFGFSAATGSSFEVHVLKSWSFSSSLQLSDATGGNKLAVGLGIGIGLFVILLVLAGFLLWKRTRGITEEVLECDLNMDDEFQKGIGPKRFCYNELESATSKFSESEKLGQGGFGDVYKGFLKDLNSYVAIKRISKESRQGIKEYATEVKIISQLRHKNLVQLLGWCHKKNDLILVYEFMTNGSLDSHLYGGKGFLTWPVRYNIALGLASAMLYLQEEWEQCVLHRDIKSSNIMLDSSFNAKLGDFGLARLVDHEKGSQTTLIAGTKGYIAPEYVITGKAYKESDIYSFGIVLLEIASGRKPVDLKAKEGQITIVEWVWELYELGELFKVADPRLCGAFDEEQMERLAVIGLWCAFPNYRIRPSMMQVIQVLKFEAQLPILPKWMPVTTCYPLTITTFSSV* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1275 643 Gene3D Transferase(Phosphotransferase) domain 1 422 633 - -
Apr1g1275 643 SMART serkin_6 345 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1275 643 Gene3D - 32 282 - -
Apr1g1275 643 Pfam Legume lectin domain 33 275 IPR001220 GO:0030246
Apr1g1275 643 CDD STKc_IRAK 351 615 - -
Apr1g1275 643 ProSitePatterns Legume lectins beta-chain signature. 154 160 IPR019825 -
Apr1g1275 643 PANTHER L-TYPE LECTIN-DOMAIN RECEPTOR KINASE 30 643 - -
Apr1g1275 643 CDD lectin_legume_LecRK_Arcelin_ConA 34 269 IPR001220 GO:0030246
Apr1g1275 643 PANTHER - 30 643 - -
Apr1g1275 643 ProSitePatterns Protein kinases ATP-binding region signature. 351 374 IPR017441 GO:0005524
Apr1g1275 643 ProSitePatterns Serine/Threonine protein kinases active-site signature. 465 477 IPR008271 GO:0004672|GO:0006468
Apr1g1275 643 Pfam Protein kinase domain 346 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1275 643 SUPERFAMILY Concanavalin A-like lectins/glucanases 33 272 IPR013320 -
Apr1g1275 643 Gene3D Phosphorylase Kinase; domain 1 330 421 - -
Apr1g1275 643 ProSitePatterns Legume lectins alpha-chain signature. 239 248 IPR000985 -
Apr1g1275 643 ProSiteProfiles Protein kinase domain profile. 345 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1275 643 SUPERFAMILY Protein kinase-like (PK-like) 329 632 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1275 Apr-Chr1 21556996 21558927 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1275 24 633 Receptor kinase-like Gene Family AT5G10530 46.166 2.18e-173 507
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Apr1g1275 Pkinase 3.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1275 - - gmx:100780181 813.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1275 1 21556996 21558927 Apr1g1275 1 21556996 21558927 ECH
Apr3g1945 3 35495792 35497850 Apr1g1275 1 21556996 21558927 PCT