Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1272 ATGGCTGCTTGCCATGTTGGTCTCAATGCAACCAACCATTTATTATGTTATGCAATGGAAATCATTTTGTTGCTCCATATGATTACTTGTGTAAACTCACTTTCATTTCATCACCAAGGCTTTGATTATGAAGATGTCAGGATTAAAGGAGATGCCACTTTGTCACATTCAAAAATTGAACTCACTTCAACCACAAGATACCAAAGCAACGCTTACAGTGTTGGGAGGGTCACAAGTTTTGAGCCTTTGCACCTGTGGGACATGAGATCAAGTGAACTCGCAGACTTCACTACTGAATTTTCCTTTATCATTTTCTCAAATGAGACTAGTTTTGGAGATGGATTTGCATTTTTCTTTGCAGATCCAAAGCTGCCACTTTTAAGTAAAATAAAAGAAGGAGGTGGTCTTGGTCTTGTGGATGGTGACCAAACATTGAAGTCAACTAAGCATCCATTTGTAGCAGTGGAGTTTGACACTCACCAAAATACATGGGATCCACCCGGCACTCATGTGGGTATAAACATCAACTCTATGATGTCAAGCATAAATGCGCCATGGTATGTTGATATTAGGCAAATGAAAGTTTATTATTGTGGAATTGAGTACAATGGCAGTTCTCATAATTTAAACGTGTCTTTCACTGGTTACATCGATGGCAAGACAGTAAAAGATTACATTTCATACACCGTTGATTTGAGAGATTACCTGCCAGAGTGGGTTATTTTTGGCTTCTCAGCTGCTACAGGAATTATGTTTGAGATGAACACACTGCTGTCATGGTCATTCGATTCAAGTTTACAAAGTAATGAGAATGTGCCAAATGATATACCTCCAATGGCAGCCTCACCAATCCCAAATCTCCACCCTTCACCAGTCCCAAATCCTAATTCTTTACCAATTCCAAGTGCTGATATTAGCCCTAAACAAGATAACCAAAGAGGTTTTTTTATGAGGTTAGGAGTTGGTGTAGGTATAGCTGCGAGTTTTCTCATTTTGGGGTTGGTTTGTAGTTTAATGTGGAAAAGGGCTAAAGGGAAAAAGAAAGATTCACTTTATGATTTGAACATGGATGATGAATTCCAAAAGGGCATTGGACCTAAGAGATTTTGCTATAAAACACTGGCAAGTGCAACAAATAACTTTGCAGAGGCACAAAAGATTGGACAAGGTGGTTTTGGTGGTGTTTACAAAGGCTATTTGAAATATGACAACTCCTTTGTTGCTATAAAGAAGATATCAAGAGAGTCCCGGCAAGGAATAAAGGAATATGCAACTGAAGTTAAGATCATTAGCCAGCTGAGGCATAGGAATTTAGTCCAATTAATTGGTTGGTGCCACAGGAAGAAAGATTTCCTCCTTATATATGAATTCATGCAAAATGGTAGCTTAGATTCCCACCTATATCATGGAAAAAGCATCTTGACATGGCAGATGAGGTACGACATTGCAATGGACTTAGCCTTGGCAGTGTTATACCTTCATGAAGAATGGGAGCAGTGTGTGCTTCATAGGGACATTAAGTCCAGCAACATTATGCTGGACTCTAGTTTCAATGCTAAGCTTGGAGATTTTGGCTTAGCTAGGCTAGTGGATCATGAGAAAGGTGCACAAACCACAATTCTAGCAGGGACCAGGGGCTACATAGCCCCTGAATATTTCACTACAGGGAAGGCTAAGAAGGAATCTGATATATACAGTTTTGGGGTTGTTTTATTGGAGTTGGCCAGTGGAATAAAACCAGTAGACCTTAAAGCCAAGGAGGGTCAAATAACCATATTTGAGTGGGTTTGGGAGCTTTATAGATTAGAACAGTTCTTTGATGCAGCAGACCCAAAACTTGGGGGAGCATTTCAGGAGGAGCAACTGGAACGTTTGCTTGTTGTTGGCCTCTGGTGTGCCAATCCAGATTATACATCCAGGCCATCTATAAGGCAAGTGATTCAAGTGCTCAAGTTTGAAGCTCCTTTACCTGTTCTCCCACAAAAGATGCCTGAGCCATATTACCATTCTCCCACAATGAGTACTGTTTTTGCTTCAGTTTCTTCTCCCTATCCAGATACATATTAG 2067 0.402 MAACHVGLNATNHLLCYAMEIILLLHMITCVNSLSFHHQGFDYEDVRIKGDATLSHSKIELTSTTRYQSNAYSVGRVTSFEPLHLWDMRSSELADFTTEFSFIIFSNETSFGDGFAFFFADPKLPLLSKIKEGGGLGLVDGDQTLKSTKHPFVAVEFDTHQNTWDPPGTHVGININSMMSSINAPWYVDIRQMKVYYCGIEYNGSSHNLNVSFTGYIDGKTVKDYISYTVDLRDYLPEWVIFGFSAATGIMFEMNTLLSWSFDSSLQSNENVPNDIPPMAASPIPNLHPSPVPNPNSLPIPSADISPKQDNQRGFFMRLGVGVGIAASFLILGLVCSLMWKRAKGKKKDSLYDLNMDDEFQKGIGPKRFCYKTLASATNNFAEAQKIGQGGFGGVYKGYLKYDNSFVAIKKISRESRQGIKEYATEVKIISQLRHRNLVQLIGWCHRKKDFLLIYEFMQNGSLDSHLYHGKSILTWQMRYDIAMDLALAVLYLHEEWEQCVLHRDIKSSNIMLDSSFNAKLGDFGLARLVDHEKGAQTTILAGTRGYIAPEYFTTGKAKKESDIYSFGVVLLELASGIKPVDLKAKEGQITIFEWVWELYRLEQFFDAADPKLGGAFQEEQLERLLVVGLWCANPDYTSRPSIRQVIQVLKFEAPLPVLPQKMPEPYYHSPTMSTVFASVSSPYPDTY* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1272 688 PANTHER LECTIN RECEPTOR KINASE 21 683 - -
Apr1g1272 688 Gene3D Transferase(Phosphotransferase) domain 1 458 670 - -
Apr1g1272 688 ProSitePatterns Legume lectins alpha-chain signature. 236 245 IPR000985 -
Apr1g1272 688 SUPERFAMILY Protein kinase-like (PK-like) 365 676 IPR011009 -
Apr1g1272 688 ProSiteProfiles Protein kinase domain profile. 381 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1272 688 SMART serkin_6 381 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1272 688 CDD lectin_legume_LecRK_Arcelin_ConA 34 266 IPR001220 GO:0030246
Apr1g1272 688 PANTHER - 21 683 - -
Apr1g1272 688 CDD STKc_IRAK 387 651 - -
Apr1g1272 688 Gene3D Phosphorylase Kinase; domain 1 366 457 - -
Apr1g1272 688 ProSitePatterns Protein kinases ATP-binding region signature. 387 411 IPR017441 GO:0005524
Apr1g1272 688 Pfam Legume lectin domain 33 271 IPR001220 GO:0030246
Apr1g1272 688 SUPERFAMILY Concanavalin A-like lectins/glucanases 32 269 IPR013320 -
Apr1g1272 688 Pfam Protein kinase domain 382 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1272 688 ProSitePatterns Serine/Threonine protein kinases active-site signature. 501 513 IPR008271 GO:0004672|GO:0006468
Apr1g1272 688 ProSitePatterns Legume lectins beta-chain signature. 153 159 IPR019825 -
Apr1g1272 688 Gene3D - 31 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1272 Apr-Chr1 21525221 21527287 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1272 12 669 Receptor kinase-like Gene Family AT5G10530 44.030 4.72e-176 515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Apr1g1272 Pkinase 8.6e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1272 - - aprc:113852043 1387.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1272 1 21525221 21527287 Apr1g1272 1 21525221 21527287 ECH
Apr1g1272 1 21525221 21527287 Apr3g1946 3 35501213 35503192 PCT