Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1271 ATGACATCCTCAGCTATGGCAGCATGCCAATACAGTAAGTGTACTCATCTACTTCCTTACTTGAACATAACCATGATATTTTTGTCTTTCATGATCCATCACGCTGCTCCTTTGAACTTCATATTTCCTCAATTTCTCAACAAGGAAGATACTTTGAGATTTGAAGGAGATGTTCATCCAGAGAAGGGATTCCTCCAACTCACCCAACTCAAGTCTGATAGTGTTGGCAGGGTTACATATTACAAACAGCTACATGTTTGGGATAGGGACTCAAGAAAACTCACGGACTTCACTTCCAATTTCTCCTTCATTATTAAACAACCAAACAAAGACCAACGTGGAGATGGAATCACATTCTTCCTTGCCAGCCCCAACTTTCCACTTCCTGTCCCACCAGATGGGTCTGGTATAGGCCTTGTGGGCCAAAAACAAATGGCAGATCCAAATTTCATAAATGAGCATCCATTTGTAGCAGTGGAATTCGACACCTTTGGGAATGATTTTGATCCCCAATATGACCATGTAGGTATCGATAATAAAACTATGATGAGTCCTTACACTGCAGAATGGTTTACTATTAAGGATGGGAGAGTATATGATGCTCAAATTAGCTACAATTCTAGCACATGCAATTTAAGTATCATCTTTACAGGATATAAGGATAATGTCACAGTGAAACAACATTACTCCCAAGTAGTAGATTTAAGAGACGTCCTACCAGAGTGGGTTGAGTTTGGCTTCTCTTCAGCAACAGGAATATTATATGAGACACATACACTTTGCTCGTGGTCTTTCGACTCGAGTTTGGACTTGGAAGTGCACAAGGATGAAAGCAAGACCGGGATGGTGATAGGTTTAAGCATTGGAGCAGTTGTTTTAATAGTTGGTATGGGATTAGCTTGGATTCTAAGGATGAAAAAAAGAGGCAAGGAAGATGACTTCGATCTTACTATGGACAGTGATTTTGAAAGAGGGAGTGGACCTAAGAAGTTTTCCTATGATGAACTTGTTACAGCAACTAACAACTTTGGAAATGAACAGAAGCTTGGAGAAGGGGGTTTTGGTGGAGTCTACAAAGGATTTATAAGAGGCTTAGGTGACTATGTTGCAGTTAAAAGAGTGTCTCAAGGATCTAGGCAGGGTGTGAAGGAGTATGCCTCTGAAGTAAAGATCATTAGTCAATTGAGGCACAGGAATTTGGTGCAGCTCCTAGGATGGTGCCATAGGAAAAATGATCTCTTACTTATCTATGAGTTCATGTCAAATGGAAGCCTAGACTCCCATTTGTTTGGAGGCAAAAGAATCCTGACATGGGCAGCAAGATATAACATTGTTGGGGGCCTAGCCTCAGCATTATTGTACCTACATGAAGAATGGGAGCAATGTGTGCTACATAGGGACATAAAATCAAGCAATGTTATGTTGGATTCAAATTTTAATGCAAAGCTTGGCGACTTTGGATTAGCTAGATTGGTGGATCATGGCAAAGCGTCACAAACAACAACTTTAGCTGGAACAATGGGATATATGGCTCCTGAATCTGCCACCAGAGGTAAGGCTAGTAGAGAGTCGGATGTATACAGTTTTGGCGTTGTTGTTTTGGAGATAACTTGTGGAAGAAAACCAATTGAACTAAAAGCCAGTGAGGAACAAATTATTATGGTAGAATGGGTTTGGGAACTCTATGGAATGAGTAATCTAATAGAAGCAGCTGATCCAAGATTGTGTGGAGACTTTGATGAACAAGAAATGGAAAGGTTAATGATAGTTGGCCTATGGTGTGTTTACCCGGATTATTGTTTGAGGCCTACAATTAGAGAAGCAATTCATGTACTCAACTCTGAAGCTCCGTTGCCCACTCTCCCACCAAAGATGCCTAAACCCACCTACATTGTTCCTTCACTTACTGCGTATTCAAACTCTACATCATCTAGTTCCAGTGCTTTTGGGCCTACTTAA 1959 0.4079 MTSSAMAACQYSKCTHLLPYLNITMIFLSFMIHHAAPLNFIFPQFLNKEDTLRFEGDVHPEKGFLQLTQLKSDSVGRVTYYKQLHVWDRDSRKLTDFTSNFSFIIKQPNKDQRGDGITFFLASPNFPLPVPPDGSGIGLVGQKQMADPNFINEHPFVAVEFDTFGNDFDPQYDHVGIDNKTMMSPYTAEWFTIKDGRVYDAQISYNSSTCNLSIIFTGYKDNVTVKQHYSQVVDLRDVLPEWVEFGFSSATGILYETHTLCSWSFDSSLDLEVHKDESKTGMVIGLSIGAVVLIVGMGLAWILRMKKRGKEDDFDLTMDSDFERGSGPKKFSYDELVTATNNFGNEQKLGEGGFGGVYKGFIRGLGDYVAVKRVSQGSRQGVKEYASEVKIISQLRHRNLVQLLGWCHRKNDLLLIYEFMSNGSLDSHLFGGKRILTWAARYNIVGGLASALLYLHEEWEQCVLHRDIKSSNVMLDSNFNAKLGDFGLARLVDHGKASQTTTLAGTMGYMAPESATRGKASRESDVYSFGVVVLEITCGRKPIELKASEEQIIMVEWVWELYGMSNLIEAADPRLCGDFDEQEMERLMIVGLWCVYPDYCLRPTIREAIHVLNSEAPLPTLPPKMPKPTYIVPSLTAYSNSTSSSSSAFGPT* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1271 652 ProSiteProfiles Protein kinase domain profile. 343 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1271 652 SUPERFAMILY Protein kinase-like (PK-like) 327 640 IPR011009 -
Apr1g1271 652 Gene3D Transferase(Phosphotransferase) domain 1 420 633 - -
Apr1g1271 652 ProSitePatterns Serine/Threonine protein kinases active-site signature. 463 475 IPR008271 GO:0004672|GO:0006468
Apr1g1271 652 CDD STKc_IRAK 349 613 - -
Apr1g1271 652 ProSitePatterns Protein kinases ATP-binding region signature. 349 372 IPR017441 GO:0005524
Apr1g1271 652 SUPERFAMILY Concanavalin A-like lectins/glucanases 37 270 IPR013320 -
Apr1g1271 652 Pfam Legume lectin domain 38 279 IPR001220 GO:0030246
Apr1g1271 652 Gene3D - 36 283 - -
Apr1g1271 652 Pfam Protein kinase domain 345 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1271 652 CDD lectin_legume_LecRK_Arcelin_ConA 38 269 IPR001220 GO:0030246
Apr1g1271 652 PANTHER LECTIN RECEPTOR KINASE 22 631 - -
Apr1g1271 652 ProSitePatterns Legume lectins beta-chain signature. 157 163 IPR019825 -
Apr1g1271 652 ProSitePatterns Legume lectins alpha-chain signature. 239 248 IPR000985 -
Apr1g1271 652 Gene3D Phosphorylase Kinase; domain 1 328 419 - -
Apr1g1271 652 PANTHER - 22 631 - -
Apr1g1271 652 SMART serkin_6 343 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1271 Apr-Chr1 21521300 21523526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1271 24 630 Receptor kinase-like Gene Family AT5G10530 46.093 1.49e-178 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Apr1g1271 Pkinase 8.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1271 - - cam:101491058 772.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1271 1 21521300 21523526 Apr1g1271 1 21521300 21523526 ECH