Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1268 ATGATGGATGTTCACAGCAGCACAGAAATAAGTGAAACTGCACATATGCTTCCTCCTCCCCCAGGCACTTTTGTAGATCGTGAAGAACTCATCCAACATGTTGGAGACTTTGCTGTGTCCCAGGGGTATGTAGTGACTATCAAGCAATCCAAGAGGGACAAAATAGTTGTACTTGGCTGTGACAGAGGAGGTGTTTATCGCAACCGGCGAAAACCTGTTGAGGAGTCCTCAGCTGAGCAAAGCCGCAAAAGAAAAAGTGGTTCTCGTCTAACAAATTGTCCTTTTGAAGCTGTGGGCAAGAAGGATGATGGCTTGTGGGTACTCACCATAAAAAATGGAACACACAATCATGAACCATTAAAGGACATGTCAGAACATCCTTCTGCCCGTCGCTTCACAGAGGAAGAAGTTTTTCGCATTAAAGAAATGACAGATGCTGGTTTGAAACCTCGACAAATTCTAAAGAGACTGAGACAAAGCAATCCAGAACTTTTGTCAACCCCAAAGCATGTTTATAATGTTAAAGCTAAGCTTAGGCAAGGAAACACAAATGTTAGGAATTTTAAGTCCTTGAGACCTGAGAAATCTGCTGGGAGAAACAACTATCTTGCTGTAATTGAACCGTCATGGAGGCAGTGCAACCCTGTGAGGGTTCCCAATCTTATTGGAGGCAGATTTGTTGATTCACTGTCTTGTGCATCAATTGAAATTTTAAATCCTGCAAGCCAGCAAGTTGTTTCTCAAGTTCCAATGACTACATGCGAGGAGTTCAAGGCAGCAGTCTTTTCTGCAAAACGGGCCTTTTCATTGTGGCGCAACACACCAATTACCACCCGGCAGAGAATCATGTTTAAGTTCCAAGAGCTTATTTGTAGAGACATTGATAAGATTGCAATGAGTATTAGTACTGAACATGGAAAAACGCTGCAAGATGCACATGTTGATGTGTTACGTGGGCTAGAGGTTGTTGAACATGCTTGTGGCATGGCAAATCTGCAAAAAGGAGAATTTATTCCCAATGTGTCCAATGGAATAGACACATACAGCATTAGAGAGCCACTTGGTGTTTGTGCTGGTATTTGCCCTTTTGACTTTCCAGCTATGATTCCCTTATGGATGTTTCCTCTTGCTGTCACATGTGGCAATACATTCATTCTAAAACCATCAGAGCAGAATCCAGGGGCATCTGTGATGCTGGCAGAGTTAGCAATAGAGGCTGGTTTACCTAATGGTGTGTTAAATATTGTTCATGGTACAAATGACATTGTCAATTCTATCTGTGATGATGATGATATAAAGGCTGTCTCATTTGTTGGTTCAAATACAGTTGGTGATTCTGTATATGCAAGAGCATCTACTAAAGGTAGATGGGTTCAGTCCAATATTGGAGCCAAAAATCATGCTGTCATAATGCCTGATGCAAGAGTAGATTCCACTTTGAAAGCTTTGGTTACAGCTGGTTTTGGTGCTGCTGGACAGAAGTGCACAGCGCTGAGTGCTGTTGTTTTTGTTGGAAGTTTCAGTCAATGGGAAGACAAACTAGTAAACCATGTCAAAGCGCTTAAGGTTAACGCTGGAACAGAACCAGACGCAGACCTTGGTCCAGTCATTAGTAAACAGGCTAAAGAACACACTTGCCGATTGATTCAAACAGGCTTGGAATCTGGTGCAAAACTAGTGCTTGATGGGAGAAACATTGTGGTTCCAGGATATGAACATGGAAACTTCATTGGTCCCACCATTTTATCAGATGTCACAGTTGATATGGGATGCTACAAGGATGAGATTCTAGGCCCAGTTCTTCTGTGTATGGAGGTTGATAACATACAAGAAGCCATAAACATCGTCAATAGCAACAAGTATGGTAATGGAGCTTCCATTTTTACAACATCTAATGCAGCTGCAAGAAAATTCCAGACCGAGGTTGAGGTTGGACAGGTTGGCATAAATGTCCCGATCTCTGTTTCATTGCCCTTTTCTTCATTTATTAGCTCCAGGCCATCTTTTGTTGGTGATTTGAGTTTTGATGTCAGAGCTGGAATTCAGTTTTACACGCAGATTAAGACAGTGACTAAAAAATGGACAGACTCATTAGATGGAGATGAAATATCTCTTGAAATACCTTTTGCTTAG 2133 0.4182 MMDVHSSTEISETAHMLPPPPGTFVDREELIQHVGDFAVSQGYVVTIKQSKRDKIVVLGCDRGGVYRNRRKPVEESSAEQSRKRKSGSRLTNCPFEAVGKKDDGLWVLTIKNGTHNHEPLKDMSEHPSARRFTEEEVFRIKEMTDAGLKPRQILKRLRQSNPELLSTPKHVYNVKAKLRQGNTNVRNFKSLRPEKSAGRNNYLAVIEPSWRQCNPVRVPNLIGGRFVDSLSCASIEILNPASQQVVSQVPMTTCEEFKAAVFSAKRAFSLWRNTPITTRQRIMFKFQELICRDIDKIAMSISTEHGKTLQDAHVDVLRGLEVVEHACGMANLQKGEFIPNVSNGIDTYSIREPLGVCAGICPFDFPAMIPLWMFPLAVTCGNTFILKPSEQNPGASVMLAELAIEAGLPNGVLNIVHGTNDIVNSICDDDDIKAVSFVGSNTVGDSVYARASTKGRWVQSNIGAKNHAVIMPDARVDSTLKALVTAGFGAAGQKCTALSAVVFVGSFSQWEDKLVNHVKALKVNAGTEPDADLGPVISKQAKEHTCRLIQTGLESGAKLVLDGRNIVVPGYEHGNFIGPTILSDVTVDMGCYKDEILGPVLLCMEVDNIQEAINIVNSNKYGNGASIFTTSNAAARKFQTEVEVGQVGINVPISVSLPFSSFISSRPSFVGDLSFDVRAGIQFYTQIKTVTKKWTDSLDGDEISLEIPFA* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1268 710 TIGRFAM MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 220 694 IPR010061 GO:0004491
Apr1g1268 710 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 488 499 IPR016160 GO:0016491
Apr1g1268 710 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 222 665 IPR016162 GO:0016491
Apr1g1268 710 SUPERFAMILY ALDH-like 209 695 IPR016161 GO:0016491
Apr1g1268 710 MobiDBLite consensus disorder prediction 69 86 - -
Apr1g1268 710 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 463 663 IPR016163 GO:0016620
Apr1g1268 710 PANTHER METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE [ACYLATING], MITOCHONDRIAL-LIKE ISOFORM X1 4 707 - -
Apr1g1268 710 MobiDBLite consensus disorder prediction 69 94 - -
Apr1g1268 710 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 4 707 IPR010061 GO:0004491
Apr1g1268 710 Pfam Aldehyde dehydrogenase family 228 690 IPR015590 GO:0016491
Apr1g1268 710 CDD ALDH_F6_MMSDH 218 694 IPR010061 GO:0004491
Apr1g1268 710 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1268 Apr-Chr1 21487777 21498596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1268 187 693 Aldehyde Dehydrogenase Gene Family AT2G14170 68.701 0.0 716
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1268 K00140 - qsu:112015070 1139.02