Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1257 ATGACGAGAAAGAAGATACCGATCAAGAAGATCGACAACATAAATGCGAGGCAAGTGACTTTCTCTAAGAGGAGAAAAGGTCTTTTCAAGAAGGCTCAGGAACTGTCAACCCTTTGTGATGCTGAGATAGCTCTCATAGTCTTTTCTGCCACCAGCAAGCTCTTTGAGTATGCAAGTTCAAGCATTCAACAAACAATTGAAAAGCGTAATCGGCATGCAATGATTCAAGGACTAGAAAACCAGTGTATTGAGCAGCAGCAGCTTGGAAGTGACTCCTATGACATGCTGCGCAAGGAAGTAGAAGATAAGGCTCATGAACTGAGTAGGTTGAATGGAGAAGAATTGCAAGGGTTGACAATAGCAGAACTGCAGAAACTGGAGGAACTCCTTCAAAGACGTTGGACCACTATTTCAAAAATCAAGGATGAAAAAATTTTACAAGAGATCAACCACCTTAAGACAAAGGAAGCCGAACTTAAGGAAGAGAACAAGAAATTGAAACAGAGCTTTGTACAAGAGCAAAGGCAATCATACGAGTCAATTACTTGCAGTTCATCTGATCATCCGCCAGACTATGGTAGTTCTGATACATCTCTCAAGTTGGGGTTGCCTGCATTTCAATAA 624 0.4135 MTRKKIPIKKIDNINARQVTFSKRRKGLFKKAQELSTLCDAEIALIVFSATSKLFEYASSSIQQTIEKRNRHAMIQGLENQCIEQQQLGSDSYDMLRKEVEDKAHELSRLNGEELQGLTIAELQKLEELLQRRWTTISKIKDEKILQEINHLKTKEAELKEENKKLKQSFVQEQRQSYESITCSSSDHPPDYGSSDTSLKLGLPAFQ* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1257 207 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Apr1g1257 207 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Apr1g1257 207 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Apr1g1257 207 Coils Coil 93 113 - -
Apr1g1257 207 CDD MADS_MEF2_like 3 68 IPR033896 GO:0000977|GO:0045944
Apr1g1257 207 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Apr1g1257 207 PANTHER - 1 203 - -
Apr1g1257 207 MobiDBLite consensus disorder prediction 178 193 - -
Apr1g1257 207 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Apr1g1257 207 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Apr1g1257 207 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Apr1g1257 207 ProSiteProfiles K-box domain profile. 86 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr1g1257 207 Coils Coil 142 176 - -
Apr1g1257 207 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Apr1g1257 207 MobiDBLite consensus disorder prediction 178 207 - -
Apr1g1257 207 Pfam K-box region 85 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr1g1257 207 SUPERFAMILY SRF-like 1 76 IPR036879 GO:0003677|GO:0046983
Apr1g1257 207 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1257 Apr-Chr1 21310295 21328731 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1257 1 204 MADS-box Gene Family AT2G22540 44.304 8.01e-58 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Apr1g1257 K-box 4.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1257 - - gmx:100779453 304.293