Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1255 ATGACAAAACCAAAGATAGAAATGAAGAAGATAGACAACATCGCAGCTAGGCAAGTGACTTTCTCGAAGAGGAAGAGAGGGCTTTTCAAGAAGGCACAGGAGCTTTCAACTCTTTGTGATGCTGAGGTAGCTGTCACAGTCTTTTCTGCTGCTGGCAAGCTCTTCGAATACGCTAGCTCGAGTGTTCAGCAGGTAGTTGAAAGGTATAATCTTCATGCAAGGATTGACAAATTACAACATCCATCTGTAGAGCTGCAGACTGACAATGACACCAACAACTACTTTGTGATGCGCAATGAAGTGGCAGATAAGACTCGTGAGCTAAGGAAGTTGAAGGGAGAAGAGCTGCAAGGACTAAAAATTCGAGAATTACAGAAACTAGAGAAACTACTAAGGAAGGGTTTGACCCTTGTGTCAAAAGCAAAGGATGAAAGAATTGTGAAGGATCTCACAACGCTCAAGAAAAAGGGAATTGAACTAACGCAAGACAACCAAAGACTGAAACAGATACAAAGTCTTGGAAATCATCAAGGGCAGTCATCTAAGTCAATCATTGTTGGCAGCCCATCAAATCATGCTAAAGAATCTGATAATGATGACGCTTCTCTCCACTTGGGGTTGTCTTTGTTTGAATGA 636 0.4182 MTKPKIEMKKIDNIAARQVTFSKRKRGLFKKAQELSTLCDAEVAVTVFSAAGKLFEYASSSVQQVVERYNLHARIDKLQHPSVELQTDNDTNNYFVMRNEVADKTRELRKLKGEELQGLKIRELQKLEKLLRKGLTLVSKAKDERIVKDLTTLKKKGIELTQDNQRLKQIQSLGNHQGQSSKSIIVGSPSNHAKESDNDDASLHLGLSLFE* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1255 211 ProSiteProfiles K-box domain profile. 87 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr1g1255 211 SUPERFAMILY SRF-like 3 81 IPR036879 GO:0003677|GO:0046983
Apr1g1255 211 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Apr1g1255 211 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 206 - -
Apr1g1255 211 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Apr1g1255 211 MobiDBLite consensus disorder prediction 172 199 - -
Apr1g1255 211 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Apr1g1255 211 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Apr1g1255 211 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Apr1g1255 211 Pfam K-box region 89 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr1g1255 211 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Apr1g1255 211 MobiDBLite consensus disorder prediction 172 192 - -
Apr1g1255 211 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Apr1g1255 211 CDD MADS_MEF2_like 3 69 IPR033896 GO:0000977|GO:0045944
Apr1g1255 211 PANTHER - 1 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1255 Apr-Chr1 21284354 21301449 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1255 1 207 MADS-box Gene Family AT2G22540 45.148 3.89e-62 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Apr1g1255 K-box 2.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1255 - - aprc:113860188 221.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1255 1 21284354 21301449 Apr1g1255 1 21284354 21301449 ECH
Apr3g1967 3 35660789 35682507 Apr1g1255 1 21284354 21301449 PCT